From e25db8edf8615f59d0682841fde8d43367ebfa53 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Mon, 21 Aug 2023 14:31:52 +0300
Subject: Rename inbredSet -> set

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
---
 examples/dump-dataset-metadata.scm |  8 ++++----
 examples/dump-genotype.scm         |  2 +-
 examples/dump-phenotype.scm        |  4 ++--
 examples/dump-probesetfreeze.scm   |  2 +-
 examples/dump-species-metadata.scm | 16 ++++++++--------
 5 files changed, 16 insertions(+), 16 deletions(-)

(limited to 'examples')

diff --git a/examples/dump-dataset-metadata.scm b/examples/dump-dataset-metadata.scm
index 2f03dfd..e732772 100755
--- a/examples/dump-dataset-metadata.scm
+++ b/examples/dump-dataset-metadata.scm
@@ -76,9 +76,9 @@
    (gnc:genotypeDataset rdfs:subClassOf gnc:dataset)
    (gnc:phenotypeDataset rdfs:subClassOf gnc:dataset)
    (gnc:probesetDataset rdfs:subClassOf gnc:dataset)
-   (gnt:belongsToInbredSet rdfs:domain gnc:dataset)
-   (gnt:belongsToInbredSet a owl:ObjectProperty)
-   (gnt:belongsToInbredSet skos:definition "The InbredSet this resource belongs to")
+   (gnt:belongsToSet rdfs:domain gnc:dataset)
+   (gnt:belongsToSet a owl:ObjectProperty)
+   (gnt:belongsToSet skos:definition "The InbredSet this resource belongs to")
    (gnt:hasTissue rdfs:domain gnc:dataset)
    (gnt:hasTissue a owl:ObjectProperty)
    (gnt:hasTissue skos:definition "Tissues this resource has")
@@ -158,7 +158,7 @@
     (set gdmt:hasDatasetIdentifierSubType (format #f "GN~a" (field InfoFiles GN_AccesionId)))
     (set gdmt:hasRightsInfo (string-downcase
                              (field DatasetStatus DatasetStatusName)))
-    (set gnt:belongsToInbredSet
+    (set gnt:belongsToSet
          (string->identifier
             "inbredSet" (field InbredSet Name)
             #:separator ""
diff --git a/examples/dump-genotype.scm b/examples/dump-genotype.scm
index d4849d7..04f1af0 100755
--- a/examples/dump-genotype.scm
+++ b/examples/dump-genotype.scm
@@ -54,7 +54,7 @@
     (set dct:created (annotate-field
                       (field GenoFreeze CreateTime)
                       '^^xsd:date))
-    (set gnt:belongsToInbredSet
+    (set gnt:belongsToSet
          (string->identifier
             "inbredSet" (field InbredSet Name)
             #:separator ""
diff --git a/examples/dump-phenotype.scm b/examples/dump-phenotype.scm
index 35f96b3..f5a8c3c 100755
--- a/examples/dump-phenotype.scm
+++ b/examples/dump-phenotype.scm
@@ -41,7 +41,7 @@
     (set dct:created (annotate-field
                       (field PublishFreeze CreateTime)
                       '^^xsd:date))
-    (set gnt:belongsToInbredSet
+    (set gnt:belongsToSet
          (string->identifier
             "inbredSet" (field InbredSet Name)
             #:separator ""
@@ -82,7 +82,7 @@
             (field ("CONCAT(IFNULL(InbredSet.Name, PublishXRef.InbredSetId), '_', PublishXRef.Id)"
                     Phenotype)))
     (set rdf:type 'gnc:phenotype)
-    (set gnt:belongsToInbredSet
+    (set gnt:belongsToSet
          (string->identifier
           "inbredSet" (field InbredSet Name)
           #:separator ""
diff --git a/examples/dump-probesetfreeze.scm b/examples/dump-probesetfreeze.scm
index fab41b4..50307bf 100755
--- a/examples/dump-probesetfreeze.scm
+++ b/examples/dump-probesetfreeze.scm
@@ -100,7 +100,7 @@
          (string->identifier
           "tissue"
           (field Tissue Short_Name)))
-    (set gnt:belongsToInbredSet
+    (set gnt:belongsToSet
          (string->identifier
             "inbredSet" (field InbredSet Name)
             #:separator ""
diff --git a/examples/dump-species-metadata.scm b/examples/dump-species-metadata.scm
index ca51ed2..a1c942e 100755
--- a/examples/dump-species-metadata.scm
+++ b/examples/dump-species-metadata.scm
@@ -146,25 +146,25 @@ At this point it is not very clear how Name, Name2, Symbol and Alias are used.
            (left-join MappingMethod
                       "ON InbredSet.MappingMethodId=MappingMethod.Id")))
   (schema-triples
-   (gnc:inbredSet skos:broader gnc:species)
-   (gnc:inbredSet skos:definition "A set of terms used to describe an inbred set")
+   (gnc:set skos:broader gnc:species)
+   (gnc:set skos:definition "A set of terms used to describe an set, which can be inbredSet, outbredSet etc etc.")
    (gnt:geneticType a owl:ObjectProperty)
-   (gnt:geneticType rdfs:domain gnc:inbredSet)
+   (gnt:geneticType rdfs:domain gnc:set)
    (gnt:code a owl:ObjectProperty)
-   (gnt:code rdfs:domain gnc:inbredSet)
+   (gnt:code rdfs:domain gnc:set)
    ;; Already defined as an owl prop in dump-species
-   (gnt:family rdfs:domain gnc:inbredSet)
+   (gnt:family rdfs:domain gnc:set)
    (gnt:phenotype a owl:ObjectProperty)
-   (gnt:phenotype rdfs:domain gnc:inbredSet)
+   (gnt:phenotype rdfs:domain gnc:set)
    (gnt:genotype a owl:ObjectProperty)
    (gnt:genotype rdfs:domain gnt:inbredSet)
    (gnt:mappingMethod a owl:ObjectProperty)
-   (gnt:mappingMethod rdfs:domain gnc:inbredSet))
+   (gnt:mappingMethod rdfs:domain gnc:set))
   (triples (string->identifier
             "inbredSet" (field InbredSet Name)
             #:separator ""
             #:proc string-capitalize-first)
-    (set rdf:type 'gnc:inbredSet)
+    (set rdf:type 'gnc:set)
     (set rdfs:label (field InbredSet FullName))
     (set skos:altLabel (field InbredSet Name))
     (set gnt:geneticType (field InbredSet GeneticType))
-- 
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