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authorMunyoki Kilyungi2026-01-06 12:59:00 +0300
committerMunyoki Kilyungi2026-01-13 12:02:51 +0300
commit5dde4224ee07411dbe98599286f97941298057fa (patch)
tree288ad4178c43ef9f64fbfd629430aba09c27aefd /examples
parentd44ea0aac02a52802a7b45d813b158ab9af16ace (diff)
downloadgn-transform-databases-5dde4224ee07411dbe98599286f97941298057fa.tar.gz
Switch to versioned rdf.genenetwork namespace.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples')
-rwxr-xr-xexamples/classification.scm6
-rwxr-xr-xexamples/dataset-metadata.scm6
-rwxr-xr-xexamples/genbank.scm6
-rwxr-xr-xexamples/genelist.scm8
-rwxr-xr-xexamples/generif.scm6
-rwxr-xr-xexamples/genotype.scm6
-rwxr-xr-xexamples/phenotype.scm6
-rwxr-xr-xexamples/publication.scm6
-rwxr-xr-xexamples/schema.scm6
-rwxr-xr-xexamples/strains.scm6
-rwxr-xr-xexamples/tissue.scm6
11 files changed, 34 insertions, 34 deletions
diff --git a/examples/classification.scm b/examples/classification.scm
index 6195ea6..6cd9e9f 100755
--- a/examples/classification.scm
+++ b/examples/classification.scm
@@ -124,10 +124,10 @@
(connection %connection-settings)
(table-metadata? #f)
(prefixes
- '(("gn:" "<http://genenetwork.org/id/>")
- ("gnc:" "<http://genenetwork.org/category/>")
+ '(("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+ ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
("owl:" "<http://www.w3.org/2002/07/owl#>")
- ("gnt:" "<http://genenetwork.org/term/>")
+ ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
("skos:" "<http://www.w3.org/2004/02/skos/core#>")
("xkos:" "<http://rdf-vocabulary.ddialliance.org/xkos#>")
("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
diff --git a/examples/dataset-metadata.scm b/examples/dataset-metadata.scm
index c40c42c..fc36a8f 100755
--- a/examples/dataset-metadata.scm
+++ b/examples/dataset-metadata.scm
@@ -483,9 +483,9 @@
("skos:" "<http://www.w3.org/2004/02/skos/core#>")
("xkos:" "<http://rdf-vocabulary.ddialliance.org/xkos#>")
("geoSeries:" "<http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=>")
- ("gnt:" "<http://genenetwork.org/term/>")
- ("gn:" "<http://genenetwork.org/id/>")
- ("gnc:" "<http://genenetwork.org/category/>")
+ ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
+ ("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+ ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
("owl:" "<http://www.w3.org/2002/07/owl#>")
("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")
diff --git a/examples/genbank.scm b/examples/genbank.scm
index 993c3bf..149ac0f 100755
--- a/examples/genbank.scm
+++ b/examples/genbank.scm
@@ -50,9 +50,9 @@
("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")
("skos:" "<http://www.w3.org/2004/02/skos/core#>")
("xkos:" "<http://rdf-vocabulary.ddialliance.org/xkos#>")
- ("gn:" "<http://genenetwork.org/id/>")
- ("gnc:" "<http://genenetwork.org/category/>")
- ("gnt:" "<http://genenetwork.org/term/>")
+ ("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+ ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
+ ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
("dct:" "<http://purl.org/dc/terms/>")
("foaf:" "<http://xmlns.com/foaf/0.1/>")
("pubmed:" "<http://rdf.ncbi.nlm.nih.gov/pubmed/>")
diff --git a/examples/genelist.scm b/examples/genelist.scm
index dbca921..60ae4cd 100755
--- a/examples/genelist.scm
+++ b/examples/genelist.scm
@@ -343,10 +343,10 @@
(connection %connection-settings)
(table-metadata? #f)
(prefixes
- '(("gn:" "<http://genenetwork.org/id/>")
- ("probeset:" "<http://genenetwork.org/probeset/>")
- ("gnc:" "<http://genenetwork.org/category/>")
- ("gnt:" "<http://genenetwork.org/term/>")
+ '(("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+ ("probeset:" "<http://rdf.genenetwork.org/v1/probeset/>")
+ ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
+ ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")
("dct:" "<http://purl.org/dc/terms/>")
diff --git a/examples/generif.scm b/examples/generif.scm
index 994c540..c4b70ae 100755
--- a/examples/generif.scm
+++ b/examples/generif.scm
@@ -153,9 +153,9 @@ GROUP BY GeneRIF.Id, GeneRIF.versionId, GeneRIF.symbol")
("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")
("skos:" "<http://www.w3.org/2004/02/skos/core#>")
("xkos:" "<http://rdf-vocabulary.ddialliance.org/xkos#>")
- ("gn:" "<http://genenetwork.org/id/>")
- ("gnc:" "<http://genenetwork.org/category/>")
- ("gnt:" "<http://genenetwork.org/term/>")
+ ("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+ ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
+ ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
("dct:" "<http://purl.org/dc/terms/>")
("foaf:" "<http://xmlns.com/foaf/0.1/>")
("pubmed:" "<http://rdf.ncbi.nlm.nih.gov/pubmed/>")
diff --git a/examples/genotype.scm b/examples/genotype.scm
index 0b0cd8e..ac170be 100755
--- a/examples/genotype.scm
+++ b/examples/genotype.scm
@@ -92,9 +92,9 @@
(table-metadata? #f)
(prefixes
'(("dct:" "<http://purl.org/dc/terms/>")
- ("gn:" "<http://genenetwork.org/id/>")
- ("gnc:" "<http://genenetwork.org/category/>")
- ("gnt:" "<http://genenetwork.org/term/>")
+ ("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+ ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
+ ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")
("owl:" "<http://www.w3.org/2002/07/owl#>")
diff --git a/examples/phenotype.scm b/examples/phenotype.scm
index 5a118b8..ae24d66 100755
--- a/examples/phenotype.scm
+++ b/examples/phenotype.scm
@@ -120,10 +120,10 @@
(table-metadata? #f)
(prefixes
'(("dct:" "<http://purl.org/dc/terms/>")
- ("gn:" "<http://genenetwork.org/id/>")
+ ("gn:" "<http://rdf.genenetwork.org/v1/id/>")
("owl:" "<http://www.w3.org/2002/07/owl#>")
- ("gnc:" "<http://genenetwork.org/category/>")
- ("gnt:" "<http://genenetwork.org/term/>")
+ ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
+ ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
("sdmx-measure:" "<http://purl.org/linked-data/sdmx/2009/measure#>")
("skos:" "<http://www.w3.org/2004/02/skos/core#>")
("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
diff --git a/examples/publication.scm b/examples/publication.scm
index eab4da7..6b57856 100755
--- a/examples/publication.scm
+++ b/examples/publication.scm
@@ -70,12 +70,12 @@
(connection %connection-settings)
(table-metadata? #f)
(prefixes
- '(("gnt:" "<http://genenetwork.org/term/>")
+ '(("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
("fabio:" "<http://purl.org/spar/fabio/>")
("dct:" "<http://purl.org/dc/terms/>")
("prism:" "<http://prismstandard.org/namespaces/basic/2.0/>")
- ("gn:" "<http://genenetwork.org/id/>")
- ("gnc:" "<http://genenetwork.org/category/>")
+ ("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+ ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
("pubmed:" "<http://rdf.ncbi.nlm.nih.gov/pubmed/>")
("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")
("xsd:" "<http://www.w3.org/2001/XMLSchema#>")
diff --git a/examples/schema.scm b/examples/schema.scm
index bfc5747..5d74d27 100755
--- a/examples/schema.scm
+++ b/examples/schema.scm
@@ -61,9 +61,9 @@
(lambda ()
(prefix "rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
(prefix "rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")
- (prefix "gn:" "<http://genenetwork.org/id/>")
- (prefix "gnc:" "<http://genenetwork.org/category/>")
- (prefix "gnt:" "<http://genenetwork.org/term/>")
+ (prefix "gn:" "<http://rdf.genenetwork.org/v1/id/>")
+ (prefix "gnc:" "<http://rdf.genenetwork.org/v1/category/>")
+ (prefix "gnt:" "<http://rdf.genenetwork.org/v1/term/>")
(prefix "xsd:" "<http://www.w3.org/2001/XMLSchema#>")
(prefix "owl:" "<http://www.w3.org/2002/07/owl#>")
(newline)
diff --git a/examples/strains.scm b/examples/strains.scm
index b2332bd..cb4978f 100755
--- a/examples/strains.scm
+++ b/examples/strains.scm
@@ -114,10 +114,10 @@ At this point it is not very clear how Name, Name2, Symbol and Alias are used.
(connection %connection-settings)
(table-metadata? #f)
(prefixes
- '(("gn:" "<http://genenetwork.org/id/>")
- ("gnc:" "<http://genenetwork.org/category/>")
+ '(("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+ ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
("owl:" "<http://www.w3.org/2002/07/owl#>")
- ("gnt:" "<http://genenetwork.org/term/>")
+ ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
("skos:" "<http://www.w3.org/2004/02/skos/core#>")
("xkos:" "<http://rdf-vocabulary.ddialliance.org/xkos#>")
("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
diff --git a/examples/tissue.scm b/examples/tissue.scm
index 6bd30ff..82cc226 100755
--- a/examples/tissue.scm
+++ b/examples/tissue.scm
@@ -43,10 +43,10 @@
(connection %connection-settings)
(table-metadata? #f)
(prefixes
- '(("gn:" "<http://genenetwork.org/id/>")
- ("gnt:" "<http://genenetwork.org/term/>")
+ '(("gn:" "<http://rdf.genenetwork.org/v1/id/>")
+ ("gnt:" "<http://rdf.genenetwork.org/v1/term/>")
("skos:" "<http://www.w3.org/2004/02/skos/core#>")
- ("gnc:" "<http://genenetwork.org/category/>")
+ ("gnc:" "<http://rdf.genenetwork.org/v1/category/>")
("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")))
(inputs