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authorArun Isaac2022-11-25 18:43:04 +0000
committerArun Isaac2022-11-25 18:43:04 +0000
commit65d48f9f0a5ff3f52cc7f01e52fa220e7f562457 (patch)
tree266bcdc7e25ca5af319265670f09502a3881acc1 /README.md
parentde098fee5b1b89d1cecfbeca75a3976b6fcb1b9b (diff)
downloadgn-transform-databases-65d48f9f0a5ff3f52cc7f01e52fa220e7f562457.tar.gz
Provide a sample conn.scm.
* README.md (Using)[Set up connection parameters]: Provide a sample conn.scm.
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@@ -46,6 +46,22 @@ Download the GeneRIF data file from
https://ftp.ncbi.nih.gov/gene/GeneRIF/generifs_basic.gz and specify
its path in the `generif-data-file` parameter.
+Here's a sample *conn.scm*.
+``` scheme
+((generif-data-file . "/home/gn/generifs_basic.gz")
+ (sql-username . "webqtlout")
+ (sql-password . "my-secret-password")
+ (sql-database . "db_webqtl")
+ (sql-host . "localhost")
+ (sql-port . 3306)
+ (virtuoso-port . 9081)
+ (virtuoso-username . "dba")
+ (virtuoso-password . "my-secret-virtuoso-password")
+ (sparql-scheme . http)
+ (sparql-host . "localhost")
+ (sparql-port . 9082))
+```
+
## Dump the database
Then, to dump the database to \~/data/dump, run