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| author | Efraim Flashner | 2023-01-12 03:55:35 -0600 |
|---|---|---|
| committer | Efraim Flashner | 2023-01-12 11:58:46 +0200 |
| commit | fc91a0d7916f89fc3b574db6c47287fe8da4a323 (patch) | |
| tree | 75ece1566dc333de1b12ec8b1371c1ba9077c29c | |
| parent | 1454b86d292b284b61ff9044dfb4221719732a60 (diff) | |
| download | gn-shepherd-services-fc91a0d7916f89fc3b574db6c47287fe8da4a323.tar.gz | |
Update genecup to 1.7
| -rw-r--r-- | genecup-channels.scm | 6 | ||||
| -rwxr-xr-x | run_genecup.sh | 1 |
2 files changed, 4 insertions, 3 deletions
diff --git a/genecup-channels.scm b/genecup-channels.scm index e1d0c41..8fbfba1 100644 --- a/genecup-channels.scm +++ b/genecup-channels.scm @@ -3,12 +3,12 @@ (name 'gn-bioinformatics) (url "https://gitlab.com/genenetwork/guix-bioinformatics") (commit - "90b466488a778cfea3693fb2157c58377849f4a6")) + "973da9d9395e9b32888955e0e72a20503d4b60fd")) (channel (name 'guix-past) (url "https://gitlab.inria.fr/guix-hpc/guix-past") (commit - "f4770290109789a5409f98b06ce3c848c43be34d") + "32e058a14fa0858814705782e4988437e510d60a") (introduction (make-channel-introduction "0c119db2ea86a389769f4d2b9c6f5c41c027e336" @@ -18,7 +18,7 @@ (name 'guix) (url "https://git.savannah.gnu.org/git/guix.git") (commit - "2ca982ff41270288913ad6b7d5d9e1cad87b06d9") + "24ad9a9a48ca4f51505912224217a2a9688c7fa0") (introduction (make-channel-introduction "9edb3f66fd807b096b48283debdcddccfea34bad" diff --git a/run_genecup.sh b/run_genecup.sh index ab5d67c..f9d4de1 100755 --- a/run_genecup.sh +++ b/run_genecup.sh @@ -3,6 +3,7 @@ export EDIRECT_PUBMED_MASTER=/export2/PubMed export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt export TMPDIR=/export/ratspub/tmp +export NLTK_DATA=/export2/PubMed/nltk_data # This version for the genecup guix profile which includes guix-bioinformatics, using genecup-channels.scm. /home/shepherd/guix-profiles/genecup/bin/guix environment --no-grafts genecup-with-tensorflow-native -- /home/shepherd/guix-profiles/genecup/bin/guix build --no-grafts genecup-with-tensorflow-native --cores=4 |