From fc91a0d7916f89fc3b574db6c47287fe8da4a323 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Thu, 12 Jan 2023 03:55:35 -0600
Subject: Update genecup to 1.7

---
 genecup-channels.scm | 6 +++---
 run_genecup.sh       | 1 +
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/genecup-channels.scm b/genecup-channels.scm
index e1d0c41..8fbfba1 100644
--- a/genecup-channels.scm
+++ b/genecup-channels.scm
@@ -3,12 +3,12 @@
     (name 'gn-bioinformatics)
     (url "https://gitlab.com/genenetwork/guix-bioinformatics")
     (commit
-      "90b466488a778cfea3693fb2157c58377849f4a6"))
+      "973da9d9395e9b32888955e0e72a20503d4b60fd"))
   (channel
     (name 'guix-past)
     (url "https://gitlab.inria.fr/guix-hpc/guix-past")
     (commit
-      "f4770290109789a5409f98b06ce3c848c43be34d")
+      "32e058a14fa0858814705782e4988437e510d60a")
     (introduction
       (make-channel-introduction
         "0c119db2ea86a389769f4d2b9c6f5c41c027e336"
@@ -18,7 +18,7 @@
     (name 'guix)
     (url "https://git.savannah.gnu.org/git/guix.git")
     (commit
-      "2ca982ff41270288913ad6b7d5d9e1cad87b06d9")
+      "24ad9a9a48ca4f51505912224217a2a9688c7fa0")
     (introduction
       (make-channel-introduction
         "9edb3f66fd807b096b48283debdcddccfea34bad"
diff --git a/run_genecup.sh b/run_genecup.sh
index ab5d67c..f9d4de1 100755
--- a/run_genecup.sh
+++ b/run_genecup.sh
@@ -3,6 +3,7 @@
 export EDIRECT_PUBMED_MASTER=/export2/PubMed
 export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt
 export TMPDIR=/export/ratspub/tmp
+export NLTK_DATA=/export2/PubMed/nltk_data
 
 # This version for the genecup guix profile which includes guix-bioinformatics, using genecup-channels.scm.
 /home/shepherd/guix-profiles/genecup/bin/guix environment --no-grafts genecup-with-tensorflow-native -- /home/shepherd/guix-profiles/genecup/bin/guix build --no-grafts genecup-with-tensorflow-native --cores=4
-- 
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