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| author | Efraim Flashner | 2023-01-22 10:10:58 +0200 |
|---|---|---|
| committer | Efraim Flashner | 2023-01-22 10:10:58 +0200 |
| commit | ea8341ec32a09f9dd6ff62c4f916c119921acefb (patch) | |
| tree | 7c0ddb0fb3d640511332590f5d4d7b9d6d20e461 | |
| parent | da02d64280a03fbba4b2f93923e2479728ba2033 (diff) | |
| download | gn-shepherd-services-ea8341ec32a09f9dd6ff62c4f916c119921acefb.tar.gz | |
update pubmed update script
| -rwxr-xr-x | update_archive-pubmed.sh | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/update_archive-pubmed.sh b/update_archive-pubmed.sh index b8bc87d..c242953 100755 --- a/update_archive-pubmed.sh +++ b/update_archive-pubmed.sh @@ -1,2 +1,6 @@ #!/bin/sh -/bin/su -l hchen -c 'export EDIRECT_PUBMED_MASTER=/export2/PubMed; export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt; export NLTK_DATA=/export2/PubMed/nltk_data; unset PATH; $(/home/shepherd/guix-profiles/genecup/bin/guix build edirect)/bin/archive-pubmed' +export EDIRECT_PUBMED_MASTER=/export2/PubMed +export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt +export NLTK_DATA=/export2/PubMed/nltk_data +unset PATH +$(/home/shepherd/guix-profiles/genecup/bin/guix build edirect)/bin/archive-pubmed |