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| author | Efraim Flashner | 2021-11-02 09:45:29 +0000 |
|---|---|---|
| committer | Shepherd | 2021-11-02 09:45:29 +0000 |
| commit | db4ae18acb66d4be55cb22cb4ec1883bfdf17e0d (patch) | |
| tree | 384f773a1a01af182651355a77b076abacfb103c | |
| parent | 1566d9cdc9902bf573cea42b3ac8558c37f2c841 (diff) | |
| download | gn-shepherd-services-db4ae18acb66d4be55cb22cb4ec1883bfdf17e0d.tar.gz | |
genecup: update service.
| -rw-r--r-- | genecup-channels.scm | 16 | ||||
| -rwxr-xr-x | run_genecup.sh | 11 |
2 files changed, 25 insertions, 2 deletions
diff --git a/genecup-channels.scm b/genecup-channels.scm new file mode 100644 index 0000000..955738b --- /dev/null +++ b/genecup-channels.scm @@ -0,0 +1,16 @@ +(list + (channel + (name 'gn-bioinformatics) + (url "http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics") + (commit + "90b466488a778cfea3693fb2157c58377849f4a6")) + (channel + (name 'guix) + (url "https://git.savannah.gnu.org/git/guix.git") + (commit + "2ca982ff41270288913ad6b7d5d9e1cad87b06d9") + (introduction + (make-channel-introduction + "9edb3f66fd807b096b48283debdcddccfea34bad" + (openpgp-fingerprint + "BBB0 2DDF 2CEA F6A8 0D1D E643 A2A0 6DF2 A33A 54FA"))))) diff --git a/run_genecup.sh b/run_genecup.sh index 12f2169..ab5d67c 100755 --- a/run_genecup.sh +++ b/run_genecup.sh @@ -1,6 +1,13 @@ #!/bin/sh -cd $(/home/shepherd/guix-profiles/genecup/bin/guix build -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics genecup-with-tensorflow-native) + export EDIRECT_PUBMED_MASTER=/export2/PubMed export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt export TMPDIR=/export/ratspub/tmp -/home/shepherd/guix-profiles/genecup/bin/guix environment -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics --ad-hoc genecup-with-tensorflow-native -- ./server.py + +# This version for the genecup guix profile which includes guix-bioinformatics, using genecup-channels.scm. +/home/shepherd/guix-profiles/genecup/bin/guix environment --no-grafts genecup-with-tensorflow-native -- /home/shepherd/guix-profiles/genecup/bin/guix build --no-grafts genecup-with-tensorflow-native --cores=4 +cd $(/home/shepherd/guix-profiles/genecup/bin/guix build genecup-with-tensorflow-native) +/home/shepherd/guix-profiles/genecup/bin/guix environment --ad-hoc genecup-with-tensorflow-native -- ./server.py + +#cd $(/home/shepherd/guix-profiles/genecup/bin/guix build -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics genecup-with-tensorflow-native) +#/home/shepherd/guix-profiles/genecup/bin/guix environment -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics --ad-hoc genecup-with-tensorflow-native -- ./server.py |