From db4ae18acb66d4be55cb22cb4ec1883bfdf17e0d Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Tue, 2 Nov 2021 09:45:29 +0000
Subject: genecup: update service.

---
 genecup-channels.scm | 16 ++++++++++++++++
 run_genecup.sh       | 11 +++++++++--
 2 files changed, 25 insertions(+), 2 deletions(-)
 create mode 100644 genecup-channels.scm

diff --git a/genecup-channels.scm b/genecup-channels.scm
new file mode 100644
index 0000000..955738b
--- /dev/null
+++ b/genecup-channels.scm
@@ -0,0 +1,16 @@
+(list
+  (channel
+    (name 'gn-bioinformatics)
+    (url "http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics")
+    (commit
+     "90b466488a778cfea3693fb2157c58377849f4a6"))
+  (channel
+    (name 'guix)
+    (url "https://git.savannah.gnu.org/git/guix.git")
+    (commit
+      "2ca982ff41270288913ad6b7d5d9e1cad87b06d9")
+    (introduction
+      (make-channel-introduction
+	"9edb3f66fd807b096b48283debdcddccfea34bad"
+	(openpgp-fingerprint
+	  "BBB0 2DDF 2CEA F6A8 0D1D  E643 A2A0 6DF2 A33A 54FA")))))
diff --git a/run_genecup.sh b/run_genecup.sh
index 12f2169..ab5d67c 100755
--- a/run_genecup.sh
+++ b/run_genecup.sh
@@ -1,6 +1,13 @@
 #!/bin/sh
-cd $(/home/shepherd/guix-profiles/genecup/bin/guix build -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics genecup-with-tensorflow-native)
+
 export EDIRECT_PUBMED_MASTER=/export2/PubMed
 export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt
 export TMPDIR=/export/ratspub/tmp
-/home/shepherd/guix-profiles/genecup/bin/guix environment -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics --ad-hoc genecup-with-tensorflow-native -- ./server.py
+
+# This version for the genecup guix profile which includes guix-bioinformatics, using genecup-channels.scm.
+/home/shepherd/guix-profiles/genecup/bin/guix environment --no-grafts genecup-with-tensorflow-native -- /home/shepherd/guix-profiles/genecup/bin/guix build --no-grafts genecup-with-tensorflow-native --cores=4
+cd $(/home/shepherd/guix-profiles/genecup/bin/guix build genecup-with-tensorflow-native)
+/home/shepherd/guix-profiles/genecup/bin/guix environment --ad-hoc genecup-with-tensorflow-native -- ./server.py
+
+#cd $(/home/shepherd/guix-profiles/genecup/bin/guix build -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics genecup-with-tensorflow-native)
+#/home/shepherd/guix-profiles/genecup/bin/guix environment -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics --ad-hoc genecup-with-tensorflow-native -- ./server.py
-- 
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