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| author | Shepherd on Tux02 | 2025-04-22 00:46:05 -0500 |
|---|---|---|
| committer | Shepherd on Tux02 | 2025-04-22 00:46:05 -0500 |
| commit | cd4512634ce1407b14b0842b0ef6a9cd35e6d46c (patch) | |
| tree | 0467cb900cf29f039ba1b7c0797bfe05b0788be8 | |
| parent | 0328b5a2071d991db71dba1295d213160caa7863 (diff) | |
| download | gn-shepherd-services-cd4512634ce1407b14b0842b0ef6a9cd35e6d46c.tar.gz | |
| -rwxr-xr-x | run_genecup.sh | 4 | ||||
| -rw-r--r-- | shepherd/init.d/genecup.scm | 2 | ||||
| -rwxr-xr-x | update_archive-pubmed.sh | 4 |
3 files changed, 5 insertions, 5 deletions
diff --git a/run_genecup.sh b/run_genecup.sh index 7e29813..1e79e85 100755 --- a/run_genecup.sh +++ b/run_genecup.sh @@ -1,8 +1,8 @@ #!/bin/sh -export EDIRECT_PUBMED_MASTER=/export2/PubMed +export EDIRECT_PUBMED_MASTER=/export3/PubMed export TMPDIR=/export/ratspub/tmp -export NLTK_DATA=/export2/PubMed/nltk_data +export NLTK_DATA=/export3/PubMed/nltk_data # This version for the genecup guix profile which includes guix-bioinformatics, using genecup-channels.scm. # shepherd@tux02:~/services/genecup$ ./guix/bin/guix build -L ~/services/genecup/guix-past/modules -L ~/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -c 24 -M 8 diff --git a/shepherd/init.d/genecup.scm b/shepherd/init.d/genecup.scm index 36b6145..99ebe75 100644 --- a/shepherd/init.d/genecup.scm +++ b/shepherd/init.d/genecup.scm @@ -5,7 +5,7 @@ #:start (make-forkexec-constructor '("/home/shepherd/run_genecup.sh") #:environment-variables - (list "EDIRECT_PUBMED_MASTER=/export2/PubMed" + (list "EDIRECT_PUBMED_MASTER=/export3/PubMed" "NLTK_DATA=/home/hchen/nltk_data" "PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt" "TMPDIR=/export/ratspub/tmp") diff --git a/update_archive-pubmed.sh b/update_archive-pubmed.sh index c242953..ce210b7 100755 --- a/update_archive-pubmed.sh +++ b/update_archive-pubmed.sh @@ -1,6 +1,6 @@ #!/bin/sh -export EDIRECT_PUBMED_MASTER=/export2/PubMed +export EDIRECT_PUBMED_MASTER=/export3/PubMed export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt -export NLTK_DATA=/export2/PubMed/nltk_data +export NLTK_DATA=/export3/PubMed/nltk_data unset PATH $(/home/shepherd/guix-profiles/genecup/bin/guix build edirect)/bin/archive-pubmed |