From cd4512634ce1407b14b0842b0ef6a9cd35e6d46c Mon Sep 17 00:00:00 2001
From: Shepherd on Tux02
Date: Tue, 22 Apr 2025 00:46:05 -0500
Subject: Update PubMed path

---
 run_genecup.sh              | 4 ++--
 shepherd/init.d/genecup.scm | 2 +-
 update_archive-pubmed.sh    | 4 ++--
 3 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/run_genecup.sh b/run_genecup.sh
index 7e29813..1e79e85 100755
--- a/run_genecup.sh
+++ b/run_genecup.sh
@@ -1,8 +1,8 @@
 #!/bin/sh
 
-export EDIRECT_PUBMED_MASTER=/export2/PubMed
+export EDIRECT_PUBMED_MASTER=/export3/PubMed
 export TMPDIR=/export/ratspub/tmp
-export NLTK_DATA=/export2/PubMed/nltk_data
+export NLTK_DATA=/export3/PubMed/nltk_data
 
 # This version for the genecup guix profile which includes guix-bioinformatics, using genecup-channels.scm.
 # shepherd@tux02:~/services/genecup$ ./guix/bin/guix build -L ~/services/genecup/guix-past/modules -L ~/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -c 24 -M 8
diff --git a/shepherd/init.d/genecup.scm b/shepherd/init.d/genecup.scm
index 36b6145..99ebe75 100644
--- a/shepherd/init.d/genecup.scm
+++ b/shepherd/init.d/genecup.scm
@@ -5,7 +5,7 @@
 	#:start (make-forkexec-constructor
 		  '("/home/shepherd/run_genecup.sh")
 		  #:environment-variables
-		  (list "EDIRECT_PUBMED_MASTER=/export2/PubMed"
+		  (list "EDIRECT_PUBMED_MASTER=/export3/PubMed"
 			"NLTK_DATA=/home/hchen/nltk_data"
 			"PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt"
 			"TMPDIR=/export/ratspub/tmp")
diff --git a/update_archive-pubmed.sh b/update_archive-pubmed.sh
index c242953..ce210b7 100755
--- a/update_archive-pubmed.sh
+++ b/update_archive-pubmed.sh
@@ -1,6 +1,6 @@
 #!/bin/sh
-export EDIRECT_PUBMED_MASTER=/export2/PubMed
+export EDIRECT_PUBMED_MASTER=/export3/PubMed
 export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt
-export NLTK_DATA=/export2/PubMed/nltk_data
+export NLTK_DATA=/export3/PubMed/nltk_data
 unset PATH
 $(/home/shepherd/guix-profiles/genecup/bin/guix build edirect)/bin/archive-pubmed
-- 
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