diff options
| author | Efraim Flashner | 2021-08-15 09:57:30 +0000 |
|---|---|---|
| committer | Shepherd | 2021-08-15 09:57:30 +0000 |
| commit | b3c96077c2ae3ebda05eb53d81fa6e377a55132d (patch) | |
| tree | 17fcd3950c44856fdb2736e486674d94e5199d7e | |
| parent | 663f6ef7a49dfd85d4bda075d73f361970f2fd7d (diff) | |
| download | gn-shepherd-services-b3c96077c2ae3ebda05eb53d81fa6e377a55132d.tar.gz | |
genecup: update service.
| -rwxr-xr-x | run_genecup.sh | 6 | ||||
| -rw-r--r-- | shepherd/init.d/genecup.scm | 7 |
2 files changed, 10 insertions, 3 deletions
diff --git a/run_genecup.sh b/run_genecup.sh index bfe90de..12f2169 100755 --- a/run_genecup.sh +++ b/run_genecup.sh @@ -1,2 +1,6 @@ #!/bin/sh -$(/home/shepherd/guix-profiles/genecup/bin/guix system container -L /home/shepherd/guix-past/modules/ -L /home/shepherd/guix-bioinformatics/ /home/shepherd/guix-bioinformatics/gn/services/genecup-container.scm --network --share=/export2/PubMed=/export2/PubMed --share=/export/ratspub=/export/ratspub) +cd $(/home/shepherd/guix-profiles/genecup/bin/guix build -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics genecup-with-tensorflow-native) +export EDIRECT_PUBMED_MASTER=/export2/PubMed +export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt +export TMPDIR=/export/ratspub/tmp +/home/shepherd/guix-profiles/genecup/bin/guix environment -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics --ad-hoc genecup-with-tensorflow-native -- ./server.py diff --git a/shepherd/init.d/genecup.scm b/shepherd/init.d/genecup.scm index 9d27529..36b6145 100644 --- a/shepherd/init.d/genecup.scm +++ b/shepherd/init.d/genecup.scm @@ -4,10 +4,13 @@ #:docstring "Run the genecup.org web server" #:start (make-forkexec-constructor '("/home/shepherd/run_genecup.sh") + #:environment-variables + (list "EDIRECT_PUBMED_MASTER=/export2/PubMed" + "NLTK_DATA=/home/hchen/nltk_data" + "PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt" + "TMPDIR=/export/ratspub/tmp") #:log-file "/home/shepherd/logs/genecup.log") #:stop (make-kill-destructor) - ;; currently running in a screen session - #:auto-start? #f #:respawn? #t)) (register-services genecup) |