From b3c96077c2ae3ebda05eb53d81fa6e377a55132d Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Sun, 15 Aug 2021 09:57:30 +0000
Subject: genecup: update service.

---
 run_genecup.sh              | 6 +++++-
 shepherd/init.d/genecup.scm | 7 +++++--
 2 files changed, 10 insertions(+), 3 deletions(-)

diff --git a/run_genecup.sh b/run_genecup.sh
index bfe90de..12f2169 100755
--- a/run_genecup.sh
+++ b/run_genecup.sh
@@ -1,2 +1,6 @@
 #!/bin/sh
-$(/home/shepherd/guix-profiles/genecup/bin/guix system container -L /home/shepherd/guix-past/modules/ -L /home/shepherd/guix-bioinformatics/ /home/shepherd/guix-bioinformatics/gn/services/genecup-container.scm --network --share=/export2/PubMed=/export2/PubMed --share=/export/ratspub=/export/ratspub)
+cd $(/home/shepherd/guix-profiles/genecup/bin/guix build -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics genecup-with-tensorflow-native)
+export EDIRECT_PUBMED_MASTER=/export2/PubMed
+export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt
+export TMPDIR=/export/ratspub/tmp
+/home/shepherd/guix-profiles/genecup/bin/guix environment -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics --ad-hoc genecup-with-tensorflow-native -- ./server.py
diff --git a/shepherd/init.d/genecup.scm b/shepherd/init.d/genecup.scm
index 9d27529..36b6145 100644
--- a/shepherd/init.d/genecup.scm
+++ b/shepherd/init.d/genecup.scm
@@ -4,10 +4,13 @@
 	#:docstring "Run the genecup.org web server"
 	#:start (make-forkexec-constructor
 		  '("/home/shepherd/run_genecup.sh")
+		  #:environment-variables
+		  (list "EDIRECT_PUBMED_MASTER=/export2/PubMed"
+			"NLTK_DATA=/home/hchen/nltk_data"
+			"PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt"
+			"TMPDIR=/export/ratspub/tmp")
 		  #:log-file "/home/shepherd/logs/genecup.log")
 	#:stop (make-kill-destructor)
-	;; currently running in a screen session
-	#:auto-start? #f
 	#:respawn? #t))
 (register-services genecup)
 
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