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#! /bin/sh -e
# genenetwork-machines --- Guix configuration for genenetwork machines
# Copyright © 2022 Arun Isaac <arunisaac@systemreboot.net>
# Copyright © 2025 Pjotr Prins <pjotr.public01@thebird.nl>
#
# This file is part of genenetwork-machines.
#
# genenetwork-machines is free software: you can redistribute it
# and/or modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation, either version 3 of
# the License, or (at your option) any later version.
#
# genenetwork-machines is distributed in the hope that it will be
# useful, but WITHOUT ANY WARRANTY; without even the implied warranty
# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with genenetwork-machines. If not, see
# <https://www.gnu.org/licenses/>.
# Build and install virtuoso container. Note the shared path is the sane default. Symlink if necessary.
# See also topics/systems/debug-and-developing-code-with-genenetwork-system-container.gmi
container_script=$(guix system container \
-L ~/guix-bioinformatics \
--network \
--verbosity=3 \
--share=/export/guix-containers/virtuoso/var/lib/virtuoso=/var/lib/virtuoso \
--share=/export/guix-containers/virtuoso/data/virtuoso/ttl=/export/data/virtuoso/ttl \
virtuoso.scm)
echo $container_script
sudo ln --force --symbolic $container_script /usr/local/bin/virtuoso-container
sudo ln --force --symbolic /usr/local/bin/virtuoso-container /var/guix/gcroots
echo "Run virtuoso with: sudo /usr/local/bin/virtuoso-container"
echo "Enter with something like: nsenter -a -t 1692115 /run/current-system/profile/bin/bash --login"
echo "Admin: isql 8891"
echo " ld_dir('/export/data/virtuoso/ttl','test.rdf','http://pjotr.genenetwork.org/');"
echo " rdf_loader_run();"
echo " checkpoint;"
echo "Web: http://localhost:8892/sparql"
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