Update virtuoso container to use our default paths, with examples.

Note that n3 thiples appear to work. See gemtext for more.

1 files changed, 14 insertions, 3 deletions

diff --git a/virtuoso-deploy.sh b/virtuoso-deploy.sh
index 0dd2509..d18caec 100755
--- a/virtuoso-deploy.sh
+++ b/virtuoso-deploy.sh
@@ -2,6 +2,7 @@
 
 # genenetwork-machines --- Guix configuration for genenetwork machines
 # Copyright © 2022 Arun Isaac <arunisaac@systemreboot.net>
+# Copyright © 2025 Pjotr Prins <pjotr.public01@thebird.nl>
 #
 # This file is part of genenetwork-machines.
 #
@@ -19,15 +20,25 @@
 # along with genenetwork-machines.  If not, see
 # <https://www.gnu.org/licenses/>.
 
-# Build and install virtuoso container on tux01.
+# Build and install virtuoso container. Note the shared path is the sane default. Symlink if necessary.
+# See also topics/systems/debug-and-developing-code-with-genenetwork-system-container.gmi
 
 container_script=$(guix system container \
+                        -L ~/guix-bioinformatics \
                         --network \
                         --verbosity=3 \
-                        --share=/export2/guix-containers/virtuoso/var/lib/virtuoso=/var/lib/virtuoso \
-                        --share=/export2/guix-containers/genenetwork/data/virtuoso=/export/data/virtuoso \
+                        --share=/export/guix-containers/virtuoso/var/lib/virtuoso=/var/lib/virtuoso \
+                        --share=/export/guix-containers/virtuoso/data/virtuoso/ttl=/export/data/virtuoso/ttl \
                         virtuoso.scm)
 
 echo $container_script
 sudo ln --force --symbolic $container_script /usr/local/bin/virtuoso-container
 sudo ln --force --symbolic /usr/local/bin/virtuoso-container /var/guix/gcroots
+
+echo "Run virtuoso with: sudo /usr/local/bin/virtuoso-container"
+echo "Enter with something like: nsenter -a -t 1692115 /run/current-system/profile/bin/bash --login"
+echo "Admin: isql 8891"
+echo "  ld_dir('/export/data/virtuoso/ttl','test.rdf','http://pjotr.genenetwork.org/');"
+echo "  rdf_loader_run();"
+echo "  checkpoint;"
+echo "Web: http://localhost:8892/sparql"