| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2 days | Add nginx block for "rdf.genenetwork.org". HEAD main | Munyoki Kilyungi | |
| Acked-by: Frederick Muriuki Muriithi <fredmanglis@gmail.com> | |||
| 2 days | Delete virtuoso schema visualization. | Munyoki Kilyungi | |
| For now this fails, and no one really uses it. Acked-by: Frederick Muriuki Muriithi <fredmanglis@gmail.com> | |||
| 2 days | Set SPARQL endpoint env for gn-guile to render RDF pages. | Munyoki Kilyungi | |
| Acked-by: Frederick Muriuki Muriithi <fredmanglis@gmail.com> | |||
| 3 days | Add "guix/" to prod container load path. | Munyoki Kilyungi | |
| 4 days | Update .guix-channel. | Munyoki Kilyungi | |
| We update this so that we can inherit sheepdog from upstream. | |||
| 4 days | Delete unused services. | Munyoki Kilyungi | |
| 4 days | Add sheepdog monitoring to dev container. | Munyoki Kilyungi | |
| 4 days | Add sheepdog as a service. | Munyoki Kilyungi | |
| 4 days | guile-sheepdog: Inherit from guix-bioinformatics. | Munyoki Kilyungi | |
| 4 days | Add "guix/" to dev container load path. | Munyoki Kilyungi | |
| 4 days | Search for gn3 modules first from GN3_PYTHONPATH. | Munyoki Kilyungi | |
| 5 days | gn-libs: Upgrade to commit 5f977e6. | Frederick Muriuki Muriithi | |
| 5 days | gn-uploader: Upgrade to commit 096fe9d. | Frederick Muriuki Muriithi | |
| 8 days | Reduce number of Gunicorn workers. | Frederick Muriuki Muriithi | |
| I reduce the number of workers by 10 to reduce resource usage, and also because we do not need so many workers. | |||
| 8 days | Virtuoso: Reduce number of buffers to keep RAM usage less that 10%. | Frederick Muriuki Muriithi | |
| Have each virtuoso instance use less memory in order to keep the services at less than or equal to 10% of the total RAM in the system. | |||
| 11 days | genenetwork3: Upgrade to commit 34a6b37. | Frederick Muriuki Muriithi | |
| 11 days | Genenetwork2: Upgrade to commit 905cacd. | Frederick Muriuki Muriithi | |
| 11 days | gn-uploader: Upgrade to commit e4db73e. | Frederick Muriuki Muriithi | |
| 12 days | gn-libs: Upgrade to commit 9bc8297. | Frederick Muriuki Muriithi | |
| 12 days | gn-guile: Inherit from guix-bioinformatics. | Frederick Muriuki Muriithi | |
| 2025-12-30 | gn-auth: Upgrade to commit bd0f453. | Frederick Muriuki Muriithi | |
| 2025-12-29 | gn-uploader: Upgrade to commit a65b120. | Frederick Muriuki Muriithi | |
| 2025-12-19 | genenetwork2: upgrade to commit c057054. | Frederick Muriuki Muriithi | |
| 2025-12-19 | genenetwork3: upgrade to commit c16eedf. | Frederick Muriuki Muriithi | |
| 2025-12-19 | gn-auth: Upgrade to commit 1f2c00e. | Frederick Muriuki Muriithi | |
| 2025-12-19 | gn-libs: Upgrade to commit edfbd94. | Frederick Muriuki Muriithi | |
| 2025-12-13 | genenetwork2: upgrade to commit bde8bde. | Frederick Muriuki Muriithi | |
| 2025-12-13 | Use package inputs: fix bugs in ee4ac37. | Frederick Muriuki Muriithi | |
| I copied and pasted the package replacement, but forgot to update the package names in the pasted lines. | |||
| 2025-12-13 | genenetwork2: Use local (to gn-machines) genenetwork3 as dependency. | Frederick Muriuki Muriithi | |
| 2025-12-13 | Update genenetwork3 to commit 810dbf2. | Frederick Muriuki Muriithi | |
| 2025-12-13 | Use local (to gn-machines) `gn-libs` definition. | Frederick Muriuki Muriithi | |
| 2025-12-13 | Add `gn-libs` definition. | Frederick Muriuki Muriithi | |
| 2025-12-03 | Expose genotype files directory to uploader | Frederick Muriuki Muriithi | |
| Expose the genotype files directory to the uploader, initially in read-only mode. | |||
| 2025-12-03 | gn-uploader: Specify TMPDIR for gn-uploader. | Frederick Muriuki Muriithi | |
| 2025-12-03 | genenetwork2: Update to commit 255a403. | Frederick Muriuki Muriithi | |
| 2025-12-03 | gn-auth: Update to commit 5823b0a. | Frederick Muriuki Muriithi | |
| 2025-12-03 | gn-uploader: Update to commit 9514647. | Frederick Muriuki Muriithi | |
| 2025-12-03 | Update to last-known working commit of guix-bioinformatics | Frederick Muriuki Muriithi | |
| Bring the declared guix-bioinformatics commit to the same commit as the channels for the last deployment to production to make moving forward easier. | |||
| 2025-12-01 | Use genenetwork package variants from this channel. | Arun Isaac | |
| 2025-12-01 | Remove unused gn-libs import. | Arun Isaac | |
| 2025-12-01 | Make repository a guix channel. | Arun Isaac | |
| 2025-11-14 | Manually create laminar profile directory if it doesn't exist. | Munyoki Kilyungi | |
| 2025-11-13 | Use latest Guix channel, not the commit with substitutes available. | Arun Isaac | |
| channel-with-substitutes-available only picks up on the commit with substitutes available when the container is built. That means we will be stuck with an old commit forever. This is not what we want. Better to pick the latest commit, and build it ourselves if substitutes aren't available. | |||
| 2025-11-12 | Adjust genetwork{2,3} reqs to not rely on gn-auth/genenetwork3. | Munyoki Kilyungi | |
| 2025-11-12 | Set the respawn limit for gn{-auth,2,3} to 5s from 0.5s. | Munyoki Kilyungi | |
| 2025-11-10 | Remove ccwl from development container. | Munyoki Kilyungi | |
| 2025-11-10 | Fix typo. | Munyoki Kilyungi | |
| 2025-11-10 | Make the {auth,llm}-db-path dir writable. | Munyoki Kilyungi | |
| 2025-11-10 | Set the correct home-directory when cloning repos in gn-guile g-exp. | Munyoki Kilyungi | |
| 2025-10-27 | Share the parent dir for `llm-db-path` with POLA wrapper | Frederick Muriuki Muriithi | |
| Share the parent directory for `llm-db-path` with the POLA wrapper, rather than just the file to ensure that the permissions are set up correctly and prevent SQLite from raising an error. | |||
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