| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 42 hours | Use genenetwork package variants from this channel. HEAD main | Arun Isaac | |
| 42 hours | Remove unused gn-libs import. | Arun Isaac | |
| 42 hours | Make repository a guix channel. | Arun Isaac | |
| 2025-11-14 | Manually create laminar profile directory if it doesn't exist. | Munyoki Kilyungi | |
| 2025-11-13 | Use latest Guix channel, not the commit with substitutes available. | Arun Isaac | |
| channel-with-substitutes-available only picks up on the commit with substitutes available when the container is built. That means we will be stuck with an old commit forever. This is not what we want. Better to pick the latest commit, and build it ourselves if substitutes aren't available. | |||
| 2025-11-12 | Adjust genetwork{2,3} reqs to not rely on gn-auth/genenetwork3. | Munyoki Kilyungi | |
| 2025-11-12 | Set the respawn limit for gn{-auth,2,3} to 5s from 0.5s. | Munyoki Kilyungi | |
| 2025-11-10 | Remove ccwl from development container. | Munyoki Kilyungi | |
| 2025-11-10 | Fix typo. | Munyoki Kilyungi | |
| 2025-11-10 | Make the {auth,llm}-db-path dir writable. | Munyoki Kilyungi | |
| 2025-11-10 | Set the correct home-directory when cloning repos in gn-guile g-exp. | Munyoki Kilyungi | |
| 2025-10-27 | Share the parent dir for `llm-db-path` with POLA wrapper | Frederick Muriuki Muriithi | |
| Share the parent directory for `llm-db-path` with the POLA wrapper, rather than just the file to ensure that the permissions are set up correctly and prevent SQLite from raising an error. | |||
| 2025-10-27 | Use 'file://' protocol to force git to do shallow local clone. | Frederick Muriuki Muriithi | |
| 2025-10-27 | Pass in the bare repository path to the gexp | Frederick Muriuki Muriithi | |
| Pass in the bare repository path to the gexp and use it instead of fetching the value from the environment. This decouples the gexp from changes in the code, e.g. should the environment variable name be changed, we do not have to change this gexp. | |||
| 2025-10-08 | Virtuoso: Explicitly specify the error-log file and enable syslog. | Frederick Muriuki Muriithi | |
| To help troubleshoot startup issues, provide a specific path for the 'ErrorLogFile' setting for virtuoso, and also enable the 'Syslog' option to enable messages before virtuoso is completely initialised. | |||
| 2025-10-08 | gn-uploader: Change ownership of and map secrets directory. | Frederick Muriuki Muriithi | |
| * Change the ownership of the secrets directory and all its children rather than just the secrets file. * Expose the secrets directory to the application, rather than just the secrets file. Make the directory writable. | |||
| 2025-10-08 | Setup path to gn-docs correctly. | Frederick Muriuki Muriithi | |
| 2025-10-08 | Define and schedule "samples counts" script to run. | Frederick Muriuki Muriithi | |
| 2025-10-08 | Map the auth db parent directory rather than just the file. | Frederick Muriuki Muriithi | |
| Mapping the file only leads to permission issues within the POLA wrapper since SQLite checks both the file, and the parent directory; because of this, we have to map the parent directory to the POLA wrapper too. | |||
| 2025-10-04 | latent service | Pjotr Prins | |
| 2025-10-04 | fallback: change hostname | Pjotr Prins | |
| 2025-10-04 | Prevent gn-auth-port from conflicting | Pjotr Prins | |
| 2025-10-04 | Add mouse-longevity service | Pjotr Prins | |
| 2025-10-04 | README.org: Fix sentence in order to improve clarity. | jgart | |
| * README.org: Fix sentence. | |||
| 2025-10-04 | Add mouse-longevity service | jgart | |
| 2025-10-04 | Add genecup container service. | jgart | |
| 2025-09-19 | Use /home/genenetwork for git cloning. | Munyoki Kilyungi | |
| 2025-09-19 | Set "genenetwork" user's home directory to /home/genenetwork. | Munyoki Kilyungi | |
| 2025-09-19 | Set the default GIT_PAGER to `cat`. | Munyoki Kilyungi | |
| 2025-09-19 | genenetwork-development: Make gn-docs repository persistent. | Munyoki Kilyungi | |
| Previously, gn-docs at `/export/data/repositories/gn-docs` was deleted and re-cloned on each service start, causing any local edits to be lost; now it is only cloned if missing, making it persistent across restarts so changes can be preserved. | |||
| 2025-09-19 | Revert "genenetwork-development-deploy.sh: Expose /export5/tmp as /tmp." | Munyoki Kilyungi | |
| This reverts commit fb1645c620a2096c2c9de47f3d59fecc32561e23. | |||
| 2025-09-19 | genenetwork-development: Map dir for auth-db-path instead of file. | Munyoki Kilyungi | |
| 2025-09-19 | genenetwork-development: Fix permissions for repository directories. | Munyoki Kilyungi | |
| * genenetwork-development.scm (genenetwork-service-type): Import (ice-9 ftw). Set top-level directories under REPOSITORIES to mode 0775 so they are writable by the "genenetwork" user/group. | |||
| 2025-09-19 | Set RSCRIPT from GN3_PROFILE env instead of development manifest. | Munyoki Kilyungi | |
| 2025-09-19 | Update gn2/gn3 shepherd-service dependencies. | Munyoki Kilyungi | |
| * genenetwork-development.scm (genenetwork-shepherd-services) [genenetwork2]: require redis gn-auth genenetwork3. [genenetwork3]: require gn-auth. | |||
| 2025-09-19 | Set environment variables for GN2. | Munyoki Kilyungi | |
| 2025-09-19 | Remove use of the "bin/genenetwork2" script. | Munyoki Kilyungi | |
| 2025-09-19 | Remove custom redis service. | Munyoki Kilyungi | |
| 2025-09-19 | Select virtuoso from "gnu". | Munyoki Kilyungi | |
| 2025-09-19 | Explicitly write to "#$repositories" for all the different projects. | Munyoki Kilyungi | |
| 2025-09-19 | Explicitly define a "repositories" dir for cloning gn-projects. | Munyoki Kilyungi | |
| 2025-09-19 | genenetwork-development: Import nss-certs from (gnu packages nss). | Munyoki Kilyungi | |
| 2025-09-03 | genenetwork-development-deploy.sh: Expose /export5/tmp as /tmp. | Munyoki Kilyungi | |
| 2025-09-03 | Remove hard-coded paths. | Munyoki Kilyungi | |
| 2025-08-18 | gn-guile: Setup envvars for X.509 certificates. | Frederick Muriuki Muriithi | |
| 2025-08-18 | <genenetwork-configuration>: Track package of 'gn-guile' that's used | Frederick Muriuki Muriithi | |
| * genenetwork/services/genenetwork.scm (<genenetwork-configuration>): Add a configuration to track the 'gn-guile' package (version, build-flags, etc) that is used when setting up the container. | |||
| 2025-08-18 | Set runtime directory for gn-guile to writable dir. | Frederick Muriuki Muriithi | |
| 2025-08-18 | filesystem mappings: Expose gn-docs checkout parent to pola-wrapper. | Frederick Muriuki Muriithi | |
| 2025-08-18 | Activations: Make the parent dir of gn-docs repo checkout writable. | Frederick Muriuki Muriithi | |
| 2025-08-16 | Update virtuoso container to use our default paths, with examples. | Pjotr Prins | |
| Note that n3 thiples appear to work. See gemtext for more. | |||
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