| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 9 hours | Expose sparql web-endpoint from container. HEAD main | Munyoki Kilyungi | |
| 3 days | gn-uploader: upgrade to commit b5a2b56. | Frederick Muriuki Muriithi | |
| 3 days | genenetwork2: upgrade to commit 1aedd1d. | Frederick Muriuki Muriithi | |
| 8 days | genenetwork2: Upgrade to commit 957c1ee. | Frederick Muriuki Muriithi | |
| 10 days | Channel - guix-rust-past-crates: Fix the channel to commit b8b7ffb. | Frederick Muriuki Muriithi | |
| Fix the `guix-rust-past-crates` at a known working commit to prevent breakages due to any changes in the channel's repo. | |||
| 10 days | Channel - guix-past: Fix the channel to commit 473c942. | Frederick Muriuki Muriithi | |
| There have been changes in the `guix-past` channels recently that have broken our builds. This commit fixes guix-past to a known working commit. | |||
| 10 days | Reapply "Update .guix-channel." | Frederick Muriuki Muriithi | |
| Restores the changes introduced by @mbonz. The issues were caused by changes in upstream channels. This reverts commit aa6706d637e26ab447499b4558e734329ceeb19d. | |||
| 10 days | Revert "Update .guix-channel." | Frederick Muriuki Muriithi | |
| The guix-bioinformatics commit 9b0955f leads to a cascade of breakages. I am thus reverting this commit to restore a previous sane state. This reverts commit 04c2a18f615bc0a387235544433989af2e8cb62b. | |||
| 11 days | gn-uploader: Typo: UPLOAD_DIRECTORY --> UPLOADS_DIRECTORY. | Frederick Muriuki Muriithi | |
| 12 days | gn-uploader: UPLOAD_FOLDER -> UPLOAD_DIRECTORY | Frederick Muriuki Muriithi | |
| Move the UPLOAD_DIRECTORY under the scratch directory and rename the configuration variable. | |||
| 12 days | gn-uploader: Rename TEMPORARY_DIRECTORY to SCRATCH_DIRECTORY | Frederick Muriuki Muriithi | |
| Thinking of it as a scratch directory help us disassociate it from the /tmp directory, that we generally want to avoid using in the first place. | |||
| 2026-01-15 | Add nginx block for "rdf.genenetwork.org". | Munyoki Kilyungi | |
| Acked-by: Frederick Muriuki Muriithi <fredmanglis@gmail.com> | |||
| 2026-01-15 | Delete virtuoso schema visualization. | Munyoki Kilyungi | |
| For now this fails, and no one really uses it. Acked-by: Frederick Muriuki Muriithi <fredmanglis@gmail.com> | |||
| 2026-01-15 | Set SPARQL endpoint env for gn-guile to render RDF pages. | Munyoki Kilyungi | |
| Acked-by: Frederick Muriuki Muriithi <fredmanglis@gmail.com> | |||
| 2026-01-14 | Add "guix/" to prod container load path. | Munyoki Kilyungi | |
| 2026-01-13 | Update .guix-channel. | Munyoki Kilyungi | |
| We update this so that we can inherit sheepdog from upstream. | |||
| 2026-01-13 | Delete unused services. | Munyoki Kilyungi | |
| 2026-01-13 | Add sheepdog monitoring to dev container. | Munyoki Kilyungi | |
| 2026-01-13 | Add sheepdog as a service. | Munyoki Kilyungi | |
| 2026-01-13 | guile-sheepdog: Inherit from guix-bioinformatics. | Munyoki Kilyungi | |
| 2026-01-13 | Add "guix/" to dev container load path. | Munyoki Kilyungi | |
| 2026-01-13 | Search for gn3 modules first from GN3_PYTHONPATH. | Munyoki Kilyungi | |
| 2026-01-12 | gn-libs: Upgrade to commit 5f977e6. | Frederick Muriuki Muriithi | |
| 2026-01-12 | gn-uploader: Upgrade to commit 096fe9d. | Frederick Muriuki Muriithi | |
| 2026-01-09 | Reduce number of Gunicorn workers. | Frederick Muriuki Muriithi | |
| I reduce the number of workers by 10 to reduce resource usage, and also because we do not need so many workers. | |||
| 2026-01-09 | Virtuoso: Reduce number of buffers to keep RAM usage less that 10%. | Frederick Muriuki Muriithi | |
| Have each virtuoso instance use less memory in order to keep the services at less than or equal to 10% of the total RAM in the system. | |||
| 2026-01-06 | genenetwork3: Upgrade to commit 34a6b37. | Frederick Muriuki Muriithi | |
| 2026-01-06 | Genenetwork2: Upgrade to commit 905cacd. | Frederick Muriuki Muriithi | |
| 2026-01-06 | gn-uploader: Upgrade to commit e4db73e. | Frederick Muriuki Muriithi | |
| 2026-01-05 | gn-libs: Upgrade to commit 9bc8297. | Frederick Muriuki Muriithi | |
| 2026-01-05 | gn-guile: Inherit from guix-bioinformatics. | Frederick Muriuki Muriithi | |
| 2025-12-30 | gn-auth: Upgrade to commit bd0f453. | Frederick Muriuki Muriithi | |
| 2025-12-29 | gn-uploader: Upgrade to commit a65b120. | Frederick Muriuki Muriithi | |
| 2025-12-19 | genenetwork2: upgrade to commit c057054. | Frederick Muriuki Muriithi | |
| 2025-12-19 | genenetwork3: upgrade to commit c16eedf. | Frederick Muriuki Muriithi | |
| 2025-12-19 | gn-auth: Upgrade to commit 1f2c00e. | Frederick Muriuki Muriithi | |
| 2025-12-19 | gn-libs: Upgrade to commit edfbd94. | Frederick Muriuki Muriithi | |
| 2025-12-13 | genenetwork2: upgrade to commit bde8bde. | Frederick Muriuki Muriithi | |
| 2025-12-13 | Use package inputs: fix bugs in ee4ac37. | Frederick Muriuki Muriithi | |
| I copied and pasted the package replacement, but forgot to update the package names in the pasted lines. | |||
| 2025-12-13 | genenetwork2: Use local (to gn-machines) genenetwork3 as dependency. | Frederick Muriuki Muriithi | |
| 2025-12-13 | Update genenetwork3 to commit 810dbf2. | Frederick Muriuki Muriithi | |
| 2025-12-13 | Use local (to gn-machines) `gn-libs` definition. | Frederick Muriuki Muriithi | |
| 2025-12-13 | Add `gn-libs` definition. | Frederick Muriuki Muriithi | |
| 2025-12-03 | Expose genotype files directory to uploader | Frederick Muriuki Muriithi | |
| Expose the genotype files directory to the uploader, initially in read-only mode. | |||
| 2025-12-03 | gn-uploader: Specify TMPDIR for gn-uploader. | Frederick Muriuki Muriithi | |
| 2025-12-03 | genenetwork2: Update to commit 255a403. | Frederick Muriuki Muriithi | |
| 2025-12-03 | gn-auth: Update to commit 5823b0a. | Frederick Muriuki Muriithi | |
| 2025-12-03 | gn-uploader: Update to commit 9514647. | Frederick Muriuki Muriithi | |
| 2025-12-03 | Update to last-known working commit of guix-bioinformatics | Frederick Muriuki Muriithi | |
| Bring the declared guix-bioinformatics commit to the same commit as the channels for the last deployment to production to make moving forward easier. | |||
| 2025-12-01 | Use genenetwork package variants from this channel. | Arun Isaac | |
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index : gn-machines | |
| Guix configuration for genenetwork machines |
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