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authorMunyoki Kilyungi2024-12-20 16:51:10 +0300
committerMunyoki Kilyungi2025-01-06 22:24:58 +0300
commit1a81133cede0cdf0659116efba3dd4fb584422a2 (patch)
tree7913fe169cf5c542f1c6b038b97ed637a6c2c8da
parentd32c16f9f551f92f07092c9cbee29cbefa162d09 (diff)
downloadgn-machines-1a81133cede0cdf0659116efba3dd4fb584422a2.tar.gz
Map "/tmp" in gn2/3 and make it writable.
-rw-r--r--genenetwork-development.scm18
1 files changed, 18 insertions, 0 deletions
diff --git a/genenetwork-development.scm b/genenetwork-development.scm
index c970332..81012c9 100644
--- a/genenetwork-development.scm
+++ b/genenetwork-development.scm
@@ -669,6 +669,15 @@ described by CONFIG, a <genenetwork-configuration> object."
                                               (source "/run/mysqld")
                                               (target source)
                                               (writable? #t))
+                                             ;; XXXX: FIXME: R/Qtl generates
+                                             ;; files in "/tmp" and
+                                             ;; "/tmp/gn2".  These files are
+                                             ;; accessed by gn3 for R/Qtl
+                                             ;; mapping
+                                             (file-system-mapping
+                                              (source "/tmp")
+                                              (target source)
+                                              (writable? #t))
                                              (file-system-mapping
                                               (source gn2-secrets)
                                               (target source)
@@ -711,6 +720,15 @@ described by CONFIG, a <genenetwork-configuration> object."
                                                 (source "/run/mysqld")
                                                 (target source)
                                                 (writable? #t))
+                                               ;; XXXX: FIXME: R/Qtl generates
+                                               ;; files in "/tmp" and
+                                               ;; "/tmp/gn2".  These files are
+                                               ;; accessed by gn3 for R/Qtl
+                                               ;; mapping
+                                               (file-system-mapping
+                                                (source "/tmp")
+                                                (target source)
+                                                (writable? #t))
                                                (file-system-mapping
                                                 (source data-directory)
                                                 (target source))