| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-10-08 | Map the auth db parent directory rather than just the file. | Frederick Muriuki Muriithi | |
| Mapping the file only leads to permission issues within the POLA wrapper since SQLite checks both the file, and the parent directory; because of this, we have to map the parent directory to the POLA wrapper too. | |||
| 2025-10-04 | latent service | Pjotr Prins | |
| 2025-10-04 | fallback: change hostname | Pjotr Prins | |
| 2025-10-04 | Prevent gn-auth-port from conflicting | Pjotr Prins | |
| 2025-10-04 | Add mouse-longevity service | Pjotr Prins | |
| 2025-10-04 | README.org: Fix sentence in order to improve clarity. | jgart | |
| * README.org: Fix sentence. | |||
| 2025-10-04 | Add mouse-longevity service | jgart | |
| 2025-10-04 | Add genecup container service. | jgart | |
| 2025-09-19 | Use /home/genenetwork for git cloning. | Munyoki Kilyungi | |
| 2025-09-19 | Set "genenetwork" user's home directory to /home/genenetwork. | Munyoki Kilyungi | |
| 2025-09-19 | Set the default GIT_PAGER to `cat`. | Munyoki Kilyungi | |
| 2025-09-19 | genenetwork-development: Make gn-docs repository persistent. | Munyoki Kilyungi | |
| Previously, gn-docs at `/export/data/repositories/gn-docs` was deleted and re-cloned on each service start, causing any local edits to be lost; now it is only cloned if missing, making it persistent across restarts so changes can be preserved. | |||
| 2025-09-19 | Revert "genenetwork-development-deploy.sh: Expose /export5/tmp as /tmp." | Munyoki Kilyungi | |
| This reverts commit fb1645c620a2096c2c9de47f3d59fecc32561e23. | |||
| 2025-09-19 | genenetwork-development: Map dir for auth-db-path instead of file. | Munyoki Kilyungi | |
| 2025-09-19 | genenetwork-development: Fix permissions for repository directories. | Munyoki Kilyungi | |
| * genenetwork-development.scm (genenetwork-service-type): Import (ice-9 ftw). Set top-level directories under REPOSITORIES to mode 0775 so they are writable by the "genenetwork" user/group. | |||
| 2025-09-19 | Set RSCRIPT from GN3_PROFILE env instead of development manifest. | Munyoki Kilyungi | |
| 2025-09-19 | Update gn2/gn3 shepherd-service dependencies. | Munyoki Kilyungi | |
| * genenetwork-development.scm (genenetwork-shepherd-services) [genenetwork2]: require redis gn-auth genenetwork3. [genenetwork3]: require gn-auth. | |||
| 2025-09-19 | Set environment variables for GN2. | Munyoki Kilyungi | |
| 2025-09-19 | Remove use of the "bin/genenetwork2" script. | Munyoki Kilyungi | |
| 2025-09-19 | Remove custom redis service. | Munyoki Kilyungi | |
| 2025-09-19 | Select virtuoso from "gnu". | Munyoki Kilyungi | |
| 2025-09-19 | Explicitly write to "#$repositories" for all the different projects. | Munyoki Kilyungi | |
| 2025-09-19 | Explicitly define a "repositories" dir for cloning gn-projects. | Munyoki Kilyungi | |
| 2025-09-19 | genenetwork-development: Import nss-certs from (gnu packages nss). | Munyoki Kilyungi | |
| 2025-09-03 | genenetwork-development-deploy.sh: Expose /export5/tmp as /tmp. | Munyoki Kilyungi | |
| 2025-09-03 | Remove hard-coded paths. | Munyoki Kilyungi | |
| 2025-08-18 | gn-guile: Setup envvars for X.509 certificates. | Frederick Muriuki Muriithi | |
| 2025-08-18 | <genenetwork-configuration>: Track package of 'gn-guile' that's used | Frederick Muriuki Muriithi | |
| * genenetwork/services/genenetwork.scm (<genenetwork-configuration>): Add a configuration to track the 'gn-guile' package (version, build-flags, etc) that is used when setting up the container. | |||
| 2025-08-18 | Set runtime directory for gn-guile to writable dir. | Frederick Muriuki Muriithi | |
| 2025-08-18 | filesystem mappings: Expose gn-docs checkout parent to pola-wrapper. | Frederick Muriuki Muriithi | |
| 2025-08-18 | Activations: Make the parent dir of gn-docs repo checkout writable. | Frederick Muriuki Muriithi | |
| 2025-08-16 | Update virtuoso container to use our default paths, with examples. | Pjotr Prins | |
| Note that n3 thiples appear to work. See gemtext for more. | |||
| 2025-08-16 | virtuoso-ose: patch in a temporary fix. | Frederick Muriuki Muriithi | |
| 2025-08-16 | Add GN_GUILE_SERVER_URL | Munyoki Kilyungi | |
| 2025-08-16 | genenetwork-development: Add gn-guile forge-project. | Munyoki Kilyungi | |
| * genenetwork-development.scm (genenetwork-projects): Add gn-guile. | |||
| 2025-08-16 | genenetwork-development: Add missing guile port. | Munyoki Kilyungi | |
| * genenetwork-development.scm (genenetwork-shepherd-services): Add gn-guile-port. | |||
| 2025-08-16 | genenetwork-development: Add gn-guile to sudoers file. | Munyoki Kilyungi | |
| * genenetwork-development.scm (operating-sytem) [sudoers-file]: Add gn-guile. | |||
| 2025-08-16 | genenetwork-development: <genenetwork-configuration>: New field. | Munyoki Kilyungi | |
| * genenetwork-development.scm (<genenetwork-configuration>) [gn-guile-repository]: New field. | |||
| 2025-08-16 | genenetwork-development: Run gn-guile from gn-guile git path. | Munyoki Kilyungi | |
| 2025-08-15 | README | Pjotr Prins | |
| 2025-08-15 | README: comments | Pjotr Prins | |
| 2025-08-11 | gn-guile-port: provide missing config variable. | Frederick Muriuki Muriithi | |
| 2025-08-11 | Publish channel as either 'gn-bioinformatics or 'guix-bioinformatics | Frederick Muriuki Muriithi | |
| * Either name is acceptable. | |||
| 2025-08-11 | Revert "virtuoso-ose: patch in a temporary fix." | Frederick Muriuki Muriithi | |
| This reverts commit 6402ef859d0057ef4fa9b369dc26719a4c1def9f. | |||
| 2025-08-07 | virtuoso-ose: patch in a temporary fix. | Frederick Muriuki Muriithi | |
| 2025-08-07 | Provide missing config variable. | Frederick Muriuki Muriithi | |
| 2025-07-22 | Override redis with a custom-redis that's not dependent on syslogd. | Munyoki Kilyungi | |
| 2025-07-22 | Set path for lmdb. | Munyoki Kilyungi | |
| We currently use lmdb for storing genotype files. | |||
| 2025-07-22 | Add curl and coreutil-minimal to %base-packages. | Munyoki Kilyungi | |
| This helps when troubleshooting issues from inside the dev container. | |||
| 2025-07-22 | genenetwork-development: Set the profile and ssl-certs inside gexp. | Munyoki Kilyungi | |
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index : gn-machines | |
| Guix configuration for genenetwork machines |
| about summary refs log tree commit diff |