diff options
Diffstat (limited to 'genenetwork-development.scm')
| -rw-r--r-- | genenetwork-development.scm | 12 |
1 files changed, 10 insertions, 2 deletions
diff --git a/genenetwork-development.scm b/genenetwork-development.scm index 841fb99..4170797 100644 --- a/genenetwork-development.scm +++ b/genenetwork-development.scm @@ -105,6 +105,8 @@ be imported into G-expressions." (default 8083)) (genotype-files genenetwork-configuration-genotype-files (default "/var/genenetwork/genotype-files")) + (sparql-endpoint genenetwork-configuration-sparql-endpoint + (default "http://localhost:8081/sparql")) (xapian-db-path genenetwork-xapian-db-path (default "/var/genenetwork/xapian"))) @@ -339,7 +341,7 @@ server described by CONFIG, a <genenetwork-configuration> object." "Return a G-expression that runs the latest genenetwork3 development server described by CONFIG, a <genenetwork-configuration> object." (match-record config <genenetwork-configuration> - (gn3-repository gn3-port xapian-db-path) + (gn3-repository gn3-port sparql-endpoint xapian-db-path) (with-manifest (package->development-manifest genenetwork3) (with-packages (list git-minimal nss-certs) (with-imported-modules '((guix build utils)) @@ -363,6 +365,7 @@ server described by CONFIG, a <genenetwork-configuration> object." ;; Configure genenetwork3. (setenv "GN3_CONF" #$(mixed-text-file "gn3.conf" + "SPARQL_ENDPOINT=\"" sparql-endpoint "\"\n" "XAPIAN_DB_PATH=\"" xapian-db-path "\"\n")) (setenv "HOME" "/tmp") ;; Run genenetwork3. @@ -775,6 +778,8 @@ reverse proxy tissue." (define %genenetwork2-port 9092) ;; Port on which genenetwork3 is listening (define %genenetwork3-port 9093) +;; Port on which virtuoso's SPARQL endpoint is listening +(define %virtuoso-sparql-port 9082) (operating-system (host-name "genenetwork-development") @@ -818,12 +823,15 @@ reverse proxy tissue." (service virtuoso-service-type (virtuoso-configuration (server-port 9081) - (http-server-port 9082))) + (http-server-port %virtuoso-sparql-port))) (service genenetwork-service-type (genenetwork-configuration (gn2-port %genenetwork2-port) (gn3-port %genenetwork3-port) (genotype-files "/export/data/genenetwork/genotype_files") + (sparql-endpoint (string-append "http://localhost:" + (number->string %virtuoso-sparql-port) + "/sparql")) (xapian-db-path "/export/data/genenetwork/xapian"))) (simple-service 'set-dump-genenetwork-database-export-directory-permissions activation-service-type |