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| -rw-r--r-- | zach-branch.scm | 75 | ||||
| -rwxr-xr-x | zach-deploy-tux01.sh | 44 |
2 files changed, 119 insertions, 0 deletions
diff --git a/zach-branch.scm b/zach-branch.scm new file mode 100644 index 0000000..bc80f13 --- /dev/null +++ b/zach-branch.scm @@ -0,0 +1,75 @@ +;;; genenetwork-machines --- Guix configuration for genenetwork machines +;;; Copyright © 2022–2024 Arun Isaac <arunisaac@systemreboot.net> +;;; +;;; This file is part of genenetwork-machines. +;;; +;;; genenetwork-machines is free software: you can redistribute it +;;; and/or modify it under the terms of the GNU General Public License +;;; as published by the Free Software Foundation, either version 3 of +;;; the License, or (at your option) any later version. +;;; +;;; genenetwork-machines is distributed in the hope that it will be +;;; useful, but WITHOUT ANY WARRANTY; without even the implied +;;; warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. +;;; See the GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with genenetwork-machines. If not, see +;;; <https://www.gnu.org/licenses/>. + +(use-modules (gnu) + (genenetwork services genenetwork) + ((gnu packages admin) #:select (shepherd)) + (gn services databases) + (gnu services databases) + (forge acme) + (forge nginx) + (forge socket)) + +(operating-system + (host-name "genenetwork-zach-branch") + (timezone "UTC") + (locale "en_US.utf8") + (bootloader (bootloader-configuration + (bootloader grub-bootloader) + (targets (list "/dev/sdX")))) + (file-systems %base-file-systems) + (users %base-user-accounts) + (sudoers-file + (mixed-text-file "sudoers" + "@include " %sudoers-specification + "\nacme ALL = NOPASSWD: " (file-append shepherd "/bin/herd") " restart nginx\n")) + (packages %base-packages) + (services (cons* (service mysql-service-type + (mysql-configuration + (auto-upgrade? #f))) + (service virtuoso-service-type + (virtuoso-configuration + (server-port 7892) + (http-server-port 7893))) + (service forge-nginx-service-type + (forge-nginx-configuration + (http-listen (forge-ip-socket + (ip "0.0.0.0") + (port 7890))) + (https-listen (forge-ip-socket + (ip "0.0.0.0") + (port 7891))))) + (service acme-service-type + (acme-configuration + (email "arunisaac@systemreboot.net"))) + (service genenetwork-service-type + (genenetwork-configuration + (server-name "gn2-zach.genenetwork.org") + (gn-auth-server-name "gn2-zach-auth.genenetwork.org") + (gn2-port 7894) + (gn3-port 7895) + (gn-auth-port 7896) + (sql-uri "mysql://webqtlout:webqtlout@localhost/db_webqtl") + (xapian-db "/export/data/genenetwork/xapian") + (sparql-endpoint "http://localhost:7893/sparql") + (gn3-data-directory "/export/data/genenetwork") + (gn2-secrets "/etc/genenetwork/genenetwork2") + (gn3-secrets "/etc/genenetwork/genenetwork3/gn3-secrets.py") + (gn-auth-secrets "/etc/genenetwork/gn-auth"))) + %base-services))) diff --git a/zach-deploy-tux01.sh b/zach-deploy-tux01.sh new file mode 100755 index 0000000..aacc7de --- /dev/null +++ b/zach-deploy-tux01.sh @@ -0,0 +1,44 @@ +#! /bin/sh -e + +# genenetwork-machines --- Guix configuration for genenetwork machines +# Copyright © 2022, 2024 Arun Isaac <arunisaac@systemreboot.net> +# +# This file is part of genenetwork-machines. +# +# genenetwork-machines is free software: you can redistribute it +# and/or modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# genenetwork-machines is distributed in the hope that it will be +# useful, but WITHOUT ANY WARRANTY; without even the implied warranty +# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with genenetwork-machines. If not, see +# <https://www.gnu.org/licenses/>. + +# Build and install genenetwork production container on tux02. + +container_script=$(/home/zas1024/opt/guix-production/bin/guix \ + system container \ + --network \ + --load-path=. \ + --verbosity=3 \ + --share=/home/zas1024/guix-containers/var/genetwork3=/var/genenetwork \ + --share=/home/zas1024/guix-containers/var/lib/acme=/var/lib/acme \ + --share=/var/lib/mysql \ + --share=/home/zas1024/guix-containers/var/lib/virtuoso=/var/lib/virtuoso \ + --share=/home/zas1024/guix-containers/var/log=/var/log \ + --share=/home/zas1024/guix-containers/etc=/etc/genenetwork \ + --share=/export/data/genenetwork/xapian \ + --share=/home/gn2/auth_copy.db=/var/genenetwork/auth.db \ + --share=/home/zas1024/guix-containers/var/log=/var/log \ + --share=/home/zas1024/gn2-zach/genotype_files=/var/genenetwork/genotype-files \ + --share=/var/run/mysqld=/run/mysqld \ + zach-branch.scm) + +echo $container_script +sudo ln --force --symbolic $container_script /usr/local/bin/genenetwork-zach-container +sudo ln --force --symbolic /usr/local/bin/genenetwork-zach-container /var/guix/gcroots |