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#! /bin/sh -e
# genenetwork-machines --- Guix configuration for genenetwork machines
# Copyright © 2022, 2024 Arun Isaac <arunisaac@systemreboot.net>
#
# This file is part of genenetwork-machines.
#
# genenetwork-machines is free software: you can redistribute it
# and/or modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation, either version 3 of
# the License, or (at your option) any later version.
#
# genenetwork-machines is distributed in the hope that it will be
# useful, but WITHOUT ANY WARRANTY; without even the implied warranty
# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with genenetwork-machines. If not, see
# <https://www.gnu.org/licenses/>.
# Build and install genenetwork production container on tux02.
container_script=$(/home/zas1024/opt/guix-production/bin/guix \
system container \
--network \
--load-path=. \
--verbosity=3 \
--share=/home/zas1024/guix-containers/var/genetwork3=/var/genenetwork \
--share=/home/zas1024/guix-containers/var/lib/acme=/var/lib/acme \
--share=/var/lib/mysql \
--share=/home/zas1024/guix-containers/var/lib/virtuoso=/var/lib/virtuoso \
--share=/home/zas1024/guix-containers/var/log=/var/log \
--share=/home/zas1024/guix-containers/etc=/etc/genenetwork \
--share=/export/data/genenetwork/xapian \
--share=/home/gn2/auth_copy.db=/var/genenetwork/auth.db \
--share=/home/zas1024/guix-containers/var/log=/var/log \
--share=/home/zas1024/gn2-zach/genotype_files=/var/genenetwork/genotype-files \
--share=/var/run/mysqld=/run/mysqld \
zach-branch.scm)
echo $container_script
sudo ln --force --symbolic $container_script /usr/local/bin/genenetwork-zach-container
sudo ln --force --symbolic /usr/local/bin/genenetwork-zach-container /var/guix/gcroots
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