about summary refs log tree commit diff
path: root/gn
AgeCommit message (Collapse)Author
2025-09-21Working on aging linksPjotr Prins
2025-08-12Remove fibers as suggested by Arun's patch:Pjotr Prins
=> https://cgit.git.savannah.gnu.org/cgit/guix/mumi.git/commit/?id=897967a84d3f51da2b1cc8c3ee942fd14f4c669b After getting: In procedure accept: Too many open files with GET /dataset/bxd-publish/values/23486.json
2025-08-11APIPjotr Prins
2025-08-04Note on BXD.json - which we should not usePjotr Prins
2025-08-02API: endpoint gets trait values for BXD in GEMMA formatPjotr Prins
2025-08-02Write gemma trait values (pheno file)Pjotr Prins
2025-08-02API: create values endpoint that returns a dict onlyPjotr Prins
2025-07-30Create endpoint for mappable BXD values as dataset/bxd-publish/mapping/valuesPjotr Prins
2025-07-30Create endpoint for dataset/bxd-publish/listPjotr Prins
2025-07-16Aliases: make it work in the webserver. You can now try:Pjotr Prins
curl http://127.0.0.1:8091/gene/aliases/Shh ["9530036O11Rik","Dsh","Hhg1","Hx","Hxl3","M100081","ShhNC","sonic hedgehog","sonic hedgehog signaling molecule"]
2025-07-16aliases: we now have a list of deduplicatied aliasesPjotr Prins
2025-07-16Aliases - add examplePjotr Prins
2025-07-16Wikidata: query for gene aliasesPjotr Prins
2025-07-13comments on precomputePjotr Prins
2024-10-23wikidata: build first queryPjotr Prins
2024-07-11Handle genotype filename to pass into gemma-wrapperPjotr Prins
2024-07-11precompute: runner completesPjotr Prins
2024-07-07precompute: URL is now correct (validated)Pjotr Prins
2024-07-07precompute: adding metadataPjotr Prins
2024-06-29Using a record instead of assoc is cleanerPjotr Prins
2024-06-27Run gemma-wrapper in a containerPjotr Prins
2024-06-27Simplified gemma runnerPjotr Prins
2024-06-26Read pheno JSON file and write out pheno file for gemmaPjotr Prins
2024-05-14Add missing strain. Remove unused callPjotr Prins
2024-05-13Preparing BXD named for strain output in JSONPjotr Prins
2024-05-09Full test for whether a data-id belongs to the BXDPjotr Prins
2024-05-07Fetch a batch of traits so we can process fasterPjotr Prins
2024-05-05Trait IDs fetch in batchPjotr Prins
2024-05-05List data-ids (trait ids) for a batchPjotr Prins
2024-02-12Change lmm mode to 9Pjotr Prins
2024-01-06Tracking metadat for GN DBPjotr Prins
2024-01-05Remove extra check and debug flag for gemma runPjotr Prins
2024-01-05Precompute will run gemma and update the DB statusPjotr Prins
2024-01-04Use tmpdir and tmp files for transient dataPjotr Prins
2024-01-04Use tmpfn for pheno outputPjotr Prins
2024-01-04Call precompute with population name - BXD only, for nowPjotr Prins
2024-01-01Run gemma-wrapper with metadataPjotr Prins
2023-12-21PrecomputePjotr Prins
2023-12-02Mysql: check database is running. And some commentsPjotr Prins
2023-12-02Run gemmaPjotr Prins
2023-11-24Handle genotypes in gemma modulePjotr Prins
2023-11-24Fetch genotype inds from json filePjotr Prins
2023-11-21Adding GEMMAPjotr Prins
2023-11-19Iterating through hitsPjotr Prins
2023-11-19Iterate precompute datasetsPjotr Prins
2023-11-18Get first BXD dataset for precomputePjotr Prins
2023-11-18Reorganize DB handler and fetch first datasetPjotr Prins
2023-11-17Now we have a list of strain names for the BXDPjotr Prins
2023-11-17First implementation of DB handlerPjotr Prins
2023-11-16Move procedures into mysql.scm and add documentationPjotr Prins
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-12-03 21:25:01 +0000