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34 hoursAliases: make it work in the webserver. You can now try:HEADmainPjotr Prins
curl http://127.0.0.1:8091/gene/aliases/Shh ["9530036O11Rik","Dsh","Hhg1","Hx","Hxl3","M100081","ShhNC","sonic hedgehog","sonic hedgehog signaling molecule"]
34 hoursaliases: we now have a list of deduplicatied aliasesPjotr Prins
35 hoursAliases - add examplePjotr Prins
35 hoursWikidata: query for gene aliasesPjotr Prins
4 dayscomments on precomputePjotr Prins
2024-10-23wikidata: build first queryPjotr Prins
2024-07-11Handle genotype filename to pass into gemma-wrapperPjotr Prins
2024-07-11precompute: runner completesPjotr Prins
2024-07-07precompute: URL is now correct (validated)Pjotr Prins
2024-07-07precompute: adding metadataPjotr Prins
2024-06-29Using a record instead of assoc is cleanerPjotr Prins
2024-06-27Run gemma-wrapper in a containerPjotr Prins
2024-06-27Simplified gemma runnerPjotr Prins
2024-06-26Read pheno JSON file and write out pheno file for gemmaPjotr Prins
2024-05-14Add missing strain. Remove unused callPjotr Prins
2024-05-13Preparing BXD named for strain output in JSONPjotr Prins
2024-05-09Full test for whether a data-id belongs to the BXDPjotr Prins
2024-05-07Fetch a batch of traits so we can process fasterPjotr Prins
2024-05-05Trait IDs fetch in batchPjotr Prins
2024-05-05List data-ids (trait ids) for a batchPjotr Prins
2024-02-12Change lmm mode to 9Pjotr Prins
2024-01-06Tracking metadat for GN DBPjotr Prins
2024-01-05Remove extra check and debug flag for gemma runPjotr Prins
2024-01-05Precompute will run gemma and update the DB statusPjotr Prins
2024-01-04Use tmpdir and tmp files for transient dataPjotr Prins
2024-01-04Use tmpfn for pheno outputPjotr Prins
2024-01-04Call precompute with population name - BXD only, for nowPjotr Prins
2024-01-01Run gemma-wrapper with metadataPjotr Prins
2023-12-21PrecomputePjotr Prins
2023-12-02Mysql: check database is running. And some commentsPjotr Prins
2023-12-02Run gemmaPjotr Prins
2023-11-24Handle genotypes in gemma modulePjotr Prins
2023-11-24Fetch genotype inds from json filePjotr Prins
2023-11-21Adding GEMMAPjotr Prins
2023-11-19Iterating through hitsPjotr Prins
2023-11-19Iterate precompute datasetsPjotr Prins
2023-11-18Get first BXD dataset for precomputePjotr Prins
2023-11-18Reorganize DB handler and fetch first datasetPjotr Prins
2023-11-17Now we have a list of strain names for the BXDPjotr Prins
2023-11-17First implementation of DB handlerPjotr Prins
2023-11-16Move procedures into mysql.scm and add documentationPjotr Prins
2023-11-15Return list of BXDPjotr Prins
2023-11-14Started on precompute scriptPjotr Prins
2023-08-27ShortnamesPjotr Prins
2023-08-23Able to render group dataPjotr Prins
2023-08-23Tests pass and set resolvesPjotr Prins
2023-08-23Refactoring URIsPjotr Prins
2023-08-22group linksPjotr Prins
2023-08-22Remove pk statementsPjotr Prins
2023-08-21Getting group infoPjotr Prins
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