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2025-09-21Render subdir of home/aging HEAD mainPjotr Prins
2025-09-21Working on aging linksPjotr Prins
2025-08-22Bump webserve copyrightsPjotr Prins
2025-08-12Remove fibers as suggested by Arun's patch:Pjotr Prins
=> https://cgit.git.savannah.gnu.org/cgit/guix/mumi.git/commit/?id=897967a84d3f51da2b1cc8c3ee942fd14f4c669b After getting: In procedure accept: Too many open files with GET /dataset/bxd-publish/values/23486.json
2025-08-11APIPjotr Prins
2025-08-07Disable .gemma API endpointPjotr Prins
2025-08-04Note on BXD.json - which we should not usePjotr Prins
2025-08-02API: endpoint gets trait values for BXD in GEMMA formatPjotr Prins
2025-08-02Write gemma trait values (pheno file)Pjotr Prins
2025-08-02API: add .json extensionPjotr Prins
2025-08-02API: create values endpoint that returns a dict onlyPjotr Prins
2025-07-30Create endpoint for mappable BXD values as dataset/bxd-publish/mapping/valuesPjotr Prins
2025-07-30Create endpoint for dataset/bxd-publish/listPjotr Prins
2025-07-30Update on running web serverPjotr Prins
2025-07-27Update READMEPjotr Prins
2025-07-22Revert "Add missing import."Munyoki Kilyungi
This reverts commit 57118453a7ab776ec2259f4d59bd4a0c8213d9d0.
2025-07-22Revert "Test webhook."Munyoki Kilyungi
This reverts commit a2639cac7be578f160c14a4eeb77a23b859bb64a.
2025-07-22Add missing import.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-22Test webhook.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-22Revert "Test webhook."Munyoki Kilyungi
This reverts commit 9836105b0c662f8f6e0cf5eb30721d1f1f06976c.
2025-07-22Test webhook.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-22Revert "Test webhook."Munyoki Kilyungi
This reverts commit 654257a9f7ae12dcf2770fd92df971831b66cdb7.
2025-07-22Test webhook.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-16Aliases: make it work in the webserver. You can now try:Pjotr Prins
curl http://127.0.0.1:8091/gene/aliases/Shh ["9530036O11Rik","Dsh","Hhg1","Hx","Hxl3","M100081","ShhNC","sonic hedgehog","sonic hedgehog signaling molecule"]
2025-07-16aliases: we now have a list of deduplicatied aliasesPjotr Prins
2025-07-16Aliases - add examplePjotr Prins
2025-07-16Wikidata: query for gene aliasesPjotr Prins
2025-07-16README: Add path to guix-bioinformatics repoPjotr Prins
2025-07-13comments on precomputePjotr Prins
2025-07-05READMEPjotr Prins
2025-02-19Use a combination of trait-id and first 12 chars of md5 sum.Munyoki Kilyungi
* scripts/lmdb-publishdata-export.scm (save-dataset-values): Use a trait's name and the first 12 characters of the dataset's md5 checksum in the index, and when storing to path. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-02-19Add .aider* to .gitignore.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-02-19Add guile script for saving published data to lmdb.Munyoki Kilyungi
* scripts/lmdb-publishdata-export.scm: New file. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-02-11Improve styling for images.Frederick Muriuki Muriithi
2025-02-11Improve styling for text.Frederick Muriuki Muriithi
2025-02-11Display the markdown with the default GN template.Frederick Muriuki Muriithi
2025-02-11Add a default page template and styling for genenetwork-like pages.Frederick Muriuki Muriithi
2025-02-11Add an endpoint for gnqa.Frederick Muriuki Muriithi
2024-12-17Add gn-guile.sh runner script.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-12-16Revert "Add gn-guile-server script."Munyoki Kilyungi
This reverts commit 709bf8076c4d1d94ba42e151c202a9ffeac048fb.
2024-12-16Add gn-guile-server script.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-11-19Make repo a channel. Link to guix-bioinformatics.Frederick Muriuki Muriithi
* .guix-channel: Specify this channel's details. Add "guix-bioinformatics" channel as a dependency. * .guix/modules/gn-guile.scm: Inherit package definition from the guix-bioinformatics definition of this package. * guix.scm: Symlink to .guix/modules/gn-guile.scm
2024-11-19Change headers' list into alistFrederick Muriuki Muriithi
Change the headers list into an alist to ensure the static files are actually sent back rather than failing with a status 500 error.
2024-11-18Make paths ambivalent of working directory.Frederick Muriuki Muriithi
Before this commit, the paths depended on the working directory, meaning if you launched the service in the "wrong" working directory, then it could not find the appropriate files. This commit makes the service ambivalent of what the working directory was when it was launched.
2024-11-18Update invocation documentation. Remove unnecessary scripts/manifestFrederick Muriuki Muriithi
Since we can now use the package file, we no longer need the invocation scripts we used before, or the manifest I'd written.
2024-11-18Add missing dependency (guile-json).Frederick Muriuki Muriithi
2024-11-06Explicitly set GUILE_LOAD_PATH for gn-guile-git build.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-11-01Make error details into pairs.Frederick Muriuki Muriithi
2024-10-31Make error details into list of cons cellsFrederick Muriuki Muriithi
If the details are not cons cells, then the `json-build-object` bails with the error: In procedure car: Wrong type argument in position 1 (expecting pair): file-error This fixes that and allows a cleaner response.
2024-10-30Add a packages manifest.Frederick Muriuki Muriithi
Track the dependencies in a manifest that can be updated without errors much easier than on the command-line.
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-10-08 00:43:24 +0000