blob: fcef29bff26e416a9e114b1f380da5e856967f71 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
|
# Tasks for Hasitha
## Tags
* kanban: hasitha
* assigned: hasitha
* status: in progress
## Tasks
### Notes
*
### This week
* [ ] Implementing CRAM encoding methods in GBAM
* - [ ] ReadName tokenization pipeline - could save ~6% space using this technique. Need to work on decoding.
* [ ] Starting off with Cigar compression sub project with Andrea
* [ ] Discuss AGC and population compression with Andrea
### Later
* [ ]
### Even later
* [ ]
### On Hold
* [ ] GBAM reader using noodles
## Done
* [X] Moving GBAM python and rust stuff to C
* [X] Fixing memory issues in C
* [X] SAM input to GBAM in Rust
* [X] agc-rs setup testing on M1 mac
|