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# Species Metadata
## 'classification-scheme-species'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT Species.Fullname FROM Species
```
The above query results to triples that have the form:
```text
gnc:Species -> skos:member -> gn:Species_fullname
```
Here's an example query:
```sparql
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
SELECT * WHERE {
?s skos:member gn:Mus_musculus .
?s ?p ?o .
}
```
Expected Result:
```rdf
gnc:Species skos:member gn:Mus_musculus .
```
## 'classification-scheme-set'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT InbredSet.Name AS InbredSetName FROM InbredSet
```
The above query results to triples that have the form:
```text
gnc:Set -> skos:member -> gn:setInbredset_inbredsetname
```
Here's an example query:
```sparql
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
SELECT * WHERE {
?s skos:member gn:setBxd .
?s ?p ?o .
}
```
Expected Result:
```rdf
gnc:Set skos:member gn:setBxd .
```
## 'species'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT Species.Fullname, Species.Fullname, Species.MenuName, Species.SpeciesName, Species.Name, Species.Family, Species.TaxonomyId FROM Species
```
The above query results to triples that have the form:
```text
gn:Species_fullname -> skos:inScheme -> gnc:ResourceClassificationScheme
gn:Species_fullname -> rdfs:label -> Species(Fullname)
gn:Species_fullname -> skos:prefLabel -> Species(MenuName)
gn:Species_fullname -> skos:altLabel -> Species(SpeciesName)
gn:Species_fullname -> gnt:shortName -> Species(Name)
gn:Species_fullname -> gnt:family -> Species(Family)
gn:Species_fullname -> skos:notation -> taxon:Species(TaxonomyId)
```
Here's an example query:
```sparql
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
SELECT * WHERE {
?s skos:inScheme gnc:ResourceClassificationScheme .
?s rdfs:label "Mus musculus" .
?s skos:prefLabel "Mouse (Mus musculus, mm10)" .
?s ?p ?o .
}
```
Expected Result:
```rdf
gn:Mus_musculus skos:inScheme gnc:ResourceClassificationScheme .
gn:Mus_musculus rdfs:label "Mus musculus" .
gn:Mus_musculus skos:prefLabel "Mouse (Mus musculus, mm10)" .
gn:Mus_musculus skos:altLabel "Mouse" .
gn:Mus_musculus gnt:shortName "mouse" .
gn:Mus_musculus gnt:family "Vertebrates" .
gn:Mus_musculus skos:notation taxon:10090 .
```
## 'inbred-set'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT InbredSet.Name AS InbredSetName, InbredSet.FullName, InbredSet.Name AS InbredSetName, InbredSet.GeneticType, InbredSet.Family, MappingMethod.Name, InbredSet.InbredSetCode, Species.Fullname FROM InbredSet LEFT JOIN Species ON InbredSet.SpeciesId=Species.Id LEFT JOIN MappingMethod ON InbredSet.MappingMethodId=MappingMethod.Id
```
The above query results to triples that have the form:
```text
gn:setInbredset_inbredsetname -> skos:inScheme -> gnc:ResourceClassificationScheme
gn:setInbredset_inbredsetname -> rdfs:label -> InbredSet(FullName)
gn:setInbredset_inbredsetname -> skos:prefLabel -> InbredSet(InbredSetName)
gn:setInbredset_inbredsetname -> gnt:geneticType -> InbredSet(GeneticType)
gn:setInbredset_inbredsetname -> gnt:family -> InbredSet(Family)
gn:setInbredset_inbredsetname -> gnt:mappingMethod -> MappingMethod(Name)
gn:setInbredset_inbredsetname -> gnt:code -> InbredSet(InbredSetCode)
gn:setInbredset_inbredsetname -> xkos:generalizes -> gn:Species_fullname
```
Here's an example query:
```sparql
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
SELECT * WHERE {
?s skos:inScheme gnc:ResourceClassificationScheme .
?s rdfs:label "BXD Family" .
?s skos:prefLabel "BXD" .
?s ?p ?o .
}
```
Expected Result:
```rdf
gn:setBxd skos:inScheme gnc:ResourceClassificationScheme .
gn:setBxd rdfs:label "BXD Family" .
gn:setBxd skos:prefLabel "BXD" .
gn:setBxd gnt:geneticType "riset" .
gn:setBxd gnt:family "Reference Populations (replicate average, SE, N)" .
gn:setBxd gnt:mappingMethod "qtlreaper" .
gn:setBxd gnt:code "BXD" .
gn:setBxd xkos:generalizes gn:Mus_musculus .
```
|
