diff options
Diffstat (limited to 'general/datasets/Inia_uthsc_mid_affymta1_apr17')
3 files changed, 889 insertions, 0 deletions
diff --git a/general/datasets/Inia_uthsc_mid_affymta1_apr17/cases.rtf b/general/datasets/Inia_uthsc_mid_affymta1_apr17/cases.rtf new file mode 100644 index 0000000..976f0ab --- /dev/null +++ b/general/datasets/Inia_uthsc_mid_affymta1_apr17/cases.rtf @@ -0,0 +1,857 @@ +<table border="0" cellpadding="0" cellspacing="0" style="width:1049px;" width="787"> + <colgroup> + <col /> + <col span="6" /> + <col /> + <col /> + <col /> + <col /> + </colgroup> + <tbody> + <tr height="15"> + <td height="15" style="height:20px;width:107px;">MicroarrayID</td> + <td style="width:87px;">Mouse.ID</td> + <td style="width:87px;">Strain</td> + <td style="width:87px;">Pyrazole</td> + <td style="width:87px;">TimePoint</td> + <td style="width:87px;">Treatment</td> + <td style="width:87px;">PCA Batch</td> + <td style="width:116px;">DissectionBatch</td> + <td style="width:115px;">ExtractionBatch</td> + <td style="width:105px;">Concentration</td> + <td style="width:87px;">RIN</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB1</td> + <td>12</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>8h</td> + <td>CIE</td> + <td>B</td> + <td>A</td> + <td align="right">1</td> + <td align="right">224.611</td> + <td> 9.0</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB2</td> + <td>50</td> + <td>DBA/2J</td> + <td>NO</td> + <td>3d</td> + <td>AIR</td> + <td>B</td> + <td>A</td> + <td align="right">1</td> + <td align="right">195.150 </td> + <td> 9.2</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB3</td> + <td>2</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>14d</td> + <td>AIR</td> + <td>B</td> + <td>A</td> + <td align="right">1</td> + <td align="right">299.415</td> + <td> 9.5</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB4</td> + <td>60</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>7d</td> + <td>AIR</td> + <td>B</td> + <td>A</td> + <td align="right">1</td> + <td align="right">300.033</td> + <td> 7.6</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB5</td> + <td>4</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>14d</td> + <td>CIE</td> + <td>A</td> + <td>A</td> + <td align="right">1</td> + <td align="right">249.226</td> + <td> 7.2</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB6</td> + <td>69</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>7d</td> + <td>AIR</td> + <td>A</td> + <td>A</td> + <td align="right">1</td> + <td align="right">161.526</td> + <td> 7.3</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB7</td> + <td>8</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>3d</td> + <td>CIE</td> + <td>B</td> + <td>A</td> + <td align="right">1</td> + <td align="right">326.862</td> + <td> 9.5</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB8</td> + <td>41</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>8h</td> + <td>AIR</td> + <td>B</td> + <td>A</td> + <td align="right">1</td> + <td align="right">352.559</td> + <td> 7.9</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB9</td> + <td>75</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>14d</td> + <td>AIR</td> + <td>B</td> + <td>B</td> + <td align="right">1</td> + <td align="right">354.218</td> + <td> 8.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB10</td> + <td>23</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>3d</td> + <td>AIR</td> + <td>B</td> + <td>B</td> + <td align="right">1</td> + <td align="right">280.396</td> + <td> 9.6</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB11</td> + <td>49</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>3d</td> + <td>AIR</td> + <td>A</td> + <td>B</td> + <td align="right">1</td> + <td align="right">180.312</td> + <td> 7.2</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB12</td> + <td>58</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>3d</td> + <td>CIE</td> + <td>B</td> + <td>B</td> + <td align="right">1</td> + <td align="right">225.072</td> + <td> NA</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB13</td> + <td>21</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>14d</td> + <td>CIE</td> + <td>B</td> + <td>C</td> + <td align="right">1</td> + <td align="right">299.623</td> + <td> 7.4</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB14</td> + <td>63</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>3d</td> + <td>CIE</td> + <td>B</td> + <td>C</td> + <td align="right">1</td> + <td align="right">70.977</td> + <td> 7.5</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB15</td> + <td>46</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>8h</td> + <td>AIR</td> + <td>B</td> + <td>C</td> + <td align="right">1</td> + <td align="right">284.115</td> + <td> 7.9</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB16</td> + <td>45</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>8h</td> + <td>AIR</td> + <td>B</td> + <td>C</td> + <td align="right">1</td> + <td align="right">338.791</td> + <td> 7.7</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB17</td> + <td>28</td> + <td>C57BL/6J</td> + <td>NO</td> + <td>3d</td> + <td>AIR</td> + <td>B</td> + <td>C</td> + <td align="right">1</td> + <td align="right">449.851</td> + <td> 7.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB18</td> + <td>78</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>14d</td> + <td>AIR</td> + <td>B</td> + <td>C</td> + <td align="right">1</td> + <td align="right">320.081</td> + <td> 7.9</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB19</td> + <td>77</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>14d</td> + <td>CIE</td> + <td>B</td> + <td>C</td> + <td align="right">1</td> + <td align="right">234.795</td> + <td> 7.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB20</td> + <td>71</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>7d</td> + <td>CIE</td> + <td>B</td> + <td>C</td> + <td align="right">1</td> + <td align="right">468.728</td> + <td> 7.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB21</td> + <td>68</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>7d</td> + <td>AIR</td> + <td>B</td> + <td>C</td> + <td align="right">1</td> + <td align="right">296.386</td> + <td> 7.9</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB22</td> + <td>29</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>8h</td> + <td>CIE</td> + <td>B</td> + <td>C</td> + <td align="right">1</td> + <td align="right">398.481</td> + <td> 8.0</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB23</td> + <td>67</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>7d</td> + <td>CIE</td> + <td>B</td> + <td>A</td> + <td align="right">2</td> + <td align="right">275.813</td> + <td> 7.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB24</td> + <td>1</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>8h</td> + <td>AIR</td> + <td>A</td> + <td>A</td> + <td align="right">2</td> + <td align="right">132.589</td> + <td> 6.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB25</td> + <td>14</td> + <td>C57BL/6J</td> + <td>NO</td> + <td>3d</td> + <td>CIE</td> + <td>A</td> + <td>A</td> + <td align="right">2</td> + <td align="right">189.666</td> + <td> 7.9</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB26</td> + <td>42</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>8h</td> + <td>CIE</td> + <td>B</td> + <td>A</td> + <td align="right">2</td> + <td align="right">310.878</td> + <td> 9.4</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB27</td> + <td>55</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>3d</td> + <td>CIE</td> + <td>B</td> + <td>A</td> + <td align="right">2</td> + <td align="right">211.576</td> + <td> 9.0</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB28</td> + <td>73</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>7d</td> + <td>CIE</td> + <td>B</td> + <td>A</td> + <td align="right">2</td> + <td align="right">287.696</td> + <td> 7.6</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB29</td> + <td>48</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>3d</td> + <td>AIR</td> + <td>B</td> + <td>A</td> + <td align="right">2</td> + <td align="right">317.532</td> + <td> 7.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB30</td> + <td>61</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>7d</td> + <td>AIR</td> + <td>B</td> + <td>B</td> + <td align="right">2</td> + <td align="right">294.808</td> + <td> 7.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB31</td> + <td>20</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>8h</td> + <td>CIE</td> + <td>B</td> + <td>B</td> + <td align="right">2</td> + <td align="right">209.301</td> + <td> 9.0</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB32</td> + <td>76</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>14d</td> + <td>CIE</td> + <td>A</td> + <td>B</td> + <td align="right">2</td> + <td align="right">120.953</td> + <td> 8.2</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB33</td> + <td>5</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>14d</td> + <td>AIR</td> + <td>B</td> + <td>B</td> + <td align="right">2</td> + <td align="right">271.808</td> + <td> 8.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB34</td> + <td>37</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>7d</td> + <td>CIE</td> + <td>B</td> + <td>B</td> + <td align="right">2</td> + <td align="right">289.261</td> + <td> 8.0</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB35</td> + <td>19</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>3d</td> + <td>CIE</td> + <td>B</td> + <td>C</td> + <td align="right">2</td> + <td align="right">306.294</td> + <td> 9.1</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB36</td> + <td>56</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>3d</td> + <td>AIR</td> + <td>B</td> + <td>C</td> + <td align="right">2</td> + <td align="right">265.964</td> + <td> 7.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB37</td> + <td>65</td> + <td>DBA/2J</td> + <td>NO</td> + <td>3d</td> + <td>CIE</td> + <td>B</td> + <td>C</td> + <td align="right">2</td> + <td align="right">259.741</td> + <td> 9.2</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB38</td> + <td>80</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>14d</td> + <td>AIR</td> + <td>B</td> + <td>C</td> + <td align="right">2</td> + <td align="right">371.000</td> + <td> 8.0</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB39</td> + <td>31</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>14d</td> + <td>CIE</td> + <td>B</td> + <td>C</td> + <td align="right">2</td> + <td align="right">349.451</td> + <td> 7.7</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB40</td> + <td>39</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>7d</td> + <td>AIR</td> + <td>C</td> + <td>C</td> + <td align="right">2</td> + <td align="right">403.083</td> + <td> 8.9</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB41</td> + <td>62</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>3d</td> + <td>CIE</td> + <td>C</td> + <td>C</td> + <td align="right">2</td> + <td align="right">505.547</td> + <td> 8.9</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB42</td> + <td>52</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>8h</td> + <td>CIE</td> + <td>C</td> + <td>C</td> + <td align="right">2</td> + <td align="right">441.549</td> + <td> 8.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB43</td> + <td>51</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>3d</td> + <td>AIR</td> + <td>C</td> + <td>C</td> + <td align="right">2</td> + <td align="right">519.427</td> + <td> 8.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB44</td> + <td>35</td> + <td>C57BL/6J</td> + <td>NO</td> + <td>3d</td> + <td>AIR</td> + <td>C</td> + <td>A</td> + <td align="right">3</td> + <td align="right">772.361</td> + <td> 8.8</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB45</td> + <td>72</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>14d</td> + <td>AIR</td> + <td>C</td> + <td>A</td> + <td align="right">3</td> + <td align="right">598.185</td> + <td> 8.9</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB46</td> + <td>32</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>7d</td> + <td>CIE</td> + <td>C</td> + <td>A</td> + <td align="right">3</td> + <td align="right">824.974</td> + <td> 8.7</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB47</td> + <td>74</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>14d</td> + <td>CIE</td> + <td>C</td> + <td>A</td> + <td align="right">3</td> + <td align="right">495.046</td> + <td> 9.4</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB48</td> + <td>54</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>8h</td> + <td>CIE</td> + <td>C</td> + <td>A</td> + <td align="right">3</td> + <td align="right">667.036</td> + <td> 9.4</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB49</td> + <td>24</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>7d</td> + <td>AIR</td> + <td>C</td> + <td>A</td> + <td align="right">3</td> + <td align="right">760.367</td> + <td> 9.2</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB50</td> + <td>9</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>3d</td> + <td>AIR</td> + <td>C</td> + <td>A</td> + <td align="right">3</td> + <td align="right">701.152</td> + <td> 9.2</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB51</td> + <td>66</td> + <td>DBA/2J</td> + <td>NO</td> + <td>3d</td> + <td>CIE</td> + <td>C</td> + <td>B</td> + <td align="right">3</td> + <td align="right">579.22</td> + <td> 8.3</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB52</td> + <td>44</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>8h</td> + <td>CIE</td> + <td>C</td> + <td>B</td> + <td align="right">3</td> + <td align="right">636.091</td> + <td> 9.4</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB53</td> + <td>34</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>7d</td> + <td>AIR</td> + <td>C</td> + <td>B</td> + <td align="right">3</td> + <td align="right">739.127</td> + <td> 9.5</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB54</td> + <td>7</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>8h</td> + <td>AIR</td> + <td>C</td> + <td>B</td> + <td align="right">3</td> + <td align="right">667.933</td> + <td> 9.2</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB55</td> + <td>36</td> + <td>C57BL/6J</td> + <td>NO</td> + <td>3d</td> + <td>CIE</td> + <td>C</td> + <td>C</td> + <td align="right">3</td> + <td align="right">605.937</td> + <td> 9.2</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB56</td> + <td>43</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>8h</td> + <td>AIR</td> + <td>C</td> + <td>C</td> + <td align="right">3</td> + <td align="right">639.161</td> + <td> 9.5</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB57</td> + <td>70</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>7d</td> + <td>CIE</td> + <td>C</td> + <td>C</td> + <td align="right">3</td> + <td align="right">630.735</td> + <td> 9.4</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB58</td> + <td>59</td> + <td>DBA/2J</td> + <td>NO</td> + <td>3d</td> + <td>AIR</td> + <td>C</td> + <td>C</td> + <td align="right">3</td> + <td align="right">548.647</td> + <td> 9.5</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB59</td> + <td>15</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>14d</td> + <td>AIR</td> + <td>C</td> + <td>C</td> + <td align="right">3</td> + <td align="right">689.793</td> + <td> 9.4</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB60</td> + <td>27</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>8h</td> + <td>AIR</td> + <td>C</td> + <td>C</td> + <td align="right">3</td> + <td align="right">580.462</td> + <td> 9.4</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB61</td> + <td>30</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>3d</td> + <td>AIR</td> + <td>C</td> + <td>C</td> + <td align="right">3</td> + <td align="right">577.826</td> + <td> 8.2</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB62</td> + <td>57</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>3d</td> + <td>AIR</td> + <td>C</td> + <td>C</td> + <td align="right">3</td> + <td align="right">581.164</td> + <td> 9.0</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB63</td> + <td>38</td> + <td>C57BL/6J</td> + <td>PZ</td> + <td>3d</td> + <td>CIE</td> + <td>C</td> + <td>C</td> + <td align="right">3</td> + <td align="right">748.421</td> + <td> 8.6</td> + </tr> + <tr height="15"> + <td height="15" style="height:20px;">MB64</td> + <td>47</td> + <td>DBA/2J</td> + <td>PZ</td> + <td>8h</td> + <td>AIR</td> + <td>C</td> + <td>C</td> + <td align="right">3</td> + <td align="right">747.345</td> + <td> 8.5</td> + </tr> + </tbody> +</table> diff --git a/general/datasets/Inia_uthsc_mid_affymta1_apr17/specifics.rtf b/general/datasets/Inia_uthsc_mid_affymta1_apr17/specifics.rtf new file mode 100644 index 0000000..729d375 --- /dev/null +++ b/general/datasets/Inia_uthsc_mid_affymta1_apr17/specifics.rtf @@ -0,0 +1 @@ +<p>SST-RMA Gene Level</p> diff --git a/general/datasets/Inia_uthsc_mid_affymta1_apr17/summary.rtf b/general/datasets/Inia_uthsc_mid_affymta1_apr17/summary.rtf new file mode 100644 index 0000000..9baa040 --- /dev/null +++ b/general/datasets/Inia_uthsc_mid_affymta1_apr17/summary.rtf @@ -0,0 +1,31 @@ +<p><b>Overview:</b></p> + +<p>1. Treated and whole brains dissected at Medical University of South Carolina (Marcelo F. Lopez laboratory)</p> + +<p>2. Frozen brains sub-dissected at UTHSC (Megan K. Mulligan laboratory)</p> + +<p>3. RNA extraction (Qiagen RNeasy kit) at UTHSC (Mulligan and Williams laboratories)</p> + +<p>4. Hybridized to Affymetrix Clariom D (aka Affymetrix MTA 1.0 ST) array at UTHSC MRC (Lorne Rose, UTHSC Molecular Resource Center)</p> + +<p>5. Initial QC and normalization (COMBAT) at UTHSC (Megan K. Mulligan laboratory)</p> + +<p>6. Transcriptome entry and phenotype entry (Arthur Centeno, Megan K. Mulligan, and Robert W. Williams)</p> + +<p> </p> + +<p><b>Chronic ethanol exposure:</b></p> + +<p>Mice were allowed to self-administer alcohol (15% v/v vs. water) for 2 h a day (5 days a week) 6 weeks prior to treatment in order to establish baseline consumption. Access to 15% alcohol versus water started 30 min prior to the start of the dark cycle. Following establishment of baseline drinking, male mice representative of each strain were separated into groups to be exposed to either weekly cycles of CIE exposure (CIE group) or air control (AIR group) exposure. </p> + +<p> </p> + +<p>Mice assigned to the CIE treatment group were exposed to alcohol vapor for 16 h a day followed by 8 h of withdrawal for 4 days per week. Following the fourth vapor exposure, mice were given a 72-h abstinence/withdrawal period before resuming ethanol intake in the home cage for 5 days. Mice in the AIR control treatment group were similarly treated but exposed only to air in the inhalation chambers. This pattern of CIE or air control exposure followed by 5 days of ethanol self-administration was repeated for four cycles. A fifth cycle of CIE (or air) exposure followed the fourth ethanol intake evaluation period, and brain tissue was collected at multiple time points (8h, 3d, 7d, 14d) after the last cycle ended. Pyrazole (1 mmol/kg) was used to stabilize blood ethanol levels (BEC) and was administered to both CIE and AIR groups. A subset of mice received no pyrazole. </p> + +<p> </p> + +<p><b>Analysis:</b></p> + +<p>1. Normalization on Affymetrix Expression Console (SST-RMA Gene Level).</p> + +<p>2. Batch effect detected (RNA concentration dependent) and corrected in ComBat</p> |