diff options
| author | Bonface | 2024-02-13 23:52:26 -0600 |
|---|---|---|
| committer | Munyoki Kilyungi | 2024-08-09 13:30:43 +0300 |
| commit | b2feda451ccfbeaed02dce9088d6dd228cf15861 (patch) | |
| tree | 3dd2883524985114070a7770cd2e9f9bd7eb1848 /general/datasets/Inia_uthsc_mid_affymta1_apr17 | |
| parent | d029d5d7f8ead1f1de8d318045004a4a6f68f5fb (diff) | |
| download | gn-docs-b2feda451ccfbeaed02dce9088d6dd228cf15861.tar.gz | |
Update dataset RTF Files.
Diffstat (limited to 'general/datasets/Inia_uthsc_mid_affymta1_apr17')
3 files changed, 889 insertions, 0 deletions
diff --git a/general/datasets/Inia_uthsc_mid_affymta1_apr17/cases.rtf b/general/datasets/Inia_uthsc_mid_affymta1_apr17/cases.rtf new file mode 100644 index 0000000..976f0ab --- /dev/null +++ b/general/datasets/Inia_uthsc_mid_affymta1_apr17/cases.rtf @@ -0,0 +1,857 @@ +<table border="0" cellpadding="0" cellspacing="0" style="width:1049px;" width="787">
+ <colgroup>
+ <col />
+ <col span="6" />
+ <col />
+ <col />
+ <col />
+ <col />
+ </colgroup>
+ <tbody>
+ <tr height="15">
+ <td height="15" style="height:20px;width:107px;">MicroarrayID</td>
+ <td style="width:87px;">Mouse.ID</td>
+ <td style="width:87px;">Strain</td>
+ <td style="width:87px;">Pyrazole</td>
+ <td style="width:87px;">TimePoint</td>
+ <td style="width:87px;">Treatment</td>
+ <td style="width:87px;">PCA Batch</td>
+ <td style="width:116px;">DissectionBatch</td>
+ <td style="width:115px;">ExtractionBatch</td>
+ <td style="width:105px;">Concentration</td>
+ <td style="width:87px;">RIN</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB1</td>
+ <td>12</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">1</td>
+ <td align="right">224.611</td>
+ <td> 9.0</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB2</td>
+ <td>50</td>
+ <td>DBA/2J</td>
+ <td>NO</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">1</td>
+ <td align="right">195.150 </td>
+ <td> 9.2</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB3</td>
+ <td>2</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">1</td>
+ <td align="right">299.415</td>
+ <td> 9.5</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB4</td>
+ <td>60</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">1</td>
+ <td align="right">300.033</td>
+ <td> 7.6</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB5</td>
+ <td>4</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>CIE</td>
+ <td>A</td>
+ <td>A</td>
+ <td align="right">1</td>
+ <td align="right">249.226</td>
+ <td> 7.2</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB6</td>
+ <td>69</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>AIR</td>
+ <td>A</td>
+ <td>A</td>
+ <td align="right">1</td>
+ <td align="right">161.526</td>
+ <td> 7.3</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB7</td>
+ <td>8</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">1</td>
+ <td align="right">326.862</td>
+ <td> 9.5</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB8</td>
+ <td>41</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">1</td>
+ <td align="right">352.559</td>
+ <td> 7.9</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB9</td>
+ <td>75</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>B</td>
+ <td align="right">1</td>
+ <td align="right">354.218</td>
+ <td> 8.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB10</td>
+ <td>23</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>B</td>
+ <td align="right">1</td>
+ <td align="right">280.396</td>
+ <td> 9.6</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB11</td>
+ <td>49</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>A</td>
+ <td>B</td>
+ <td align="right">1</td>
+ <td align="right">180.312</td>
+ <td> 7.2</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB12</td>
+ <td>58</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>B</td>
+ <td align="right">1</td>
+ <td align="right">225.072</td>
+ <td> NA</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB13</td>
+ <td>21</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">1</td>
+ <td align="right">299.623</td>
+ <td> 7.4</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB14</td>
+ <td>63</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">1</td>
+ <td align="right">70.977</td>
+ <td> 7.5</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB15</td>
+ <td>46</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">1</td>
+ <td align="right">284.115</td>
+ <td> 7.9</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB16</td>
+ <td>45</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">1</td>
+ <td align="right">338.791</td>
+ <td> 7.7</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB17</td>
+ <td>28</td>
+ <td>C57BL/6J</td>
+ <td>NO</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">1</td>
+ <td align="right">449.851</td>
+ <td> 7.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB18</td>
+ <td>78</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">1</td>
+ <td align="right">320.081</td>
+ <td> 7.9</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB19</td>
+ <td>77</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">1</td>
+ <td align="right">234.795</td>
+ <td> 7.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB20</td>
+ <td>71</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">1</td>
+ <td align="right">468.728</td>
+ <td> 7.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB21</td>
+ <td>68</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">1</td>
+ <td align="right">296.386</td>
+ <td> 7.9</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB22</td>
+ <td>29</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">1</td>
+ <td align="right">398.481</td>
+ <td> 8.0</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB23</td>
+ <td>67</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">2</td>
+ <td align="right">275.813</td>
+ <td> 7.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB24</td>
+ <td>1</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>AIR</td>
+ <td>A</td>
+ <td>A</td>
+ <td align="right">2</td>
+ <td align="right">132.589</td>
+ <td> 6.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB25</td>
+ <td>14</td>
+ <td>C57BL/6J</td>
+ <td>NO</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>A</td>
+ <td>A</td>
+ <td align="right">2</td>
+ <td align="right">189.666</td>
+ <td> 7.9</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB26</td>
+ <td>42</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">2</td>
+ <td align="right">310.878</td>
+ <td> 9.4</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB27</td>
+ <td>55</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">2</td>
+ <td align="right">211.576</td>
+ <td> 9.0</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB28</td>
+ <td>73</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">2</td>
+ <td align="right">287.696</td>
+ <td> 7.6</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB29</td>
+ <td>48</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>A</td>
+ <td align="right">2</td>
+ <td align="right">317.532</td>
+ <td> 7.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB30</td>
+ <td>61</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>B</td>
+ <td align="right">2</td>
+ <td align="right">294.808</td>
+ <td> 7.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB31</td>
+ <td>20</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>B</td>
+ <td align="right">2</td>
+ <td align="right">209.301</td>
+ <td> 9.0</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB32</td>
+ <td>76</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>CIE</td>
+ <td>A</td>
+ <td>B</td>
+ <td align="right">2</td>
+ <td align="right">120.953</td>
+ <td> 8.2</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB33</td>
+ <td>5</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>B</td>
+ <td align="right">2</td>
+ <td align="right">271.808</td>
+ <td> 8.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB34</td>
+ <td>37</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>B</td>
+ <td align="right">2</td>
+ <td align="right">289.261</td>
+ <td> 8.0</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB35</td>
+ <td>19</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">2</td>
+ <td align="right">306.294</td>
+ <td> 9.1</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB36</td>
+ <td>56</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">2</td>
+ <td align="right">265.964</td>
+ <td> 7.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB37</td>
+ <td>65</td>
+ <td>DBA/2J</td>
+ <td>NO</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">2</td>
+ <td align="right">259.741</td>
+ <td> 9.2</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB38</td>
+ <td>80</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>AIR</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">2</td>
+ <td align="right">371.000</td>
+ <td> 8.0</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB39</td>
+ <td>31</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>CIE</td>
+ <td>B</td>
+ <td>C</td>
+ <td align="right">2</td>
+ <td align="right">349.451</td>
+ <td> 7.7</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB40</td>
+ <td>39</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">2</td>
+ <td align="right">403.083</td>
+ <td> 8.9</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB41</td>
+ <td>62</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">2</td>
+ <td align="right">505.547</td>
+ <td> 8.9</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB42</td>
+ <td>52</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>CIE</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">2</td>
+ <td align="right">441.549</td>
+ <td> 8.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB43</td>
+ <td>51</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">2</td>
+ <td align="right">519.427</td>
+ <td> 8.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB44</td>
+ <td>35</td>
+ <td>C57BL/6J</td>
+ <td>NO</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>A</td>
+ <td align="right">3</td>
+ <td align="right">772.361</td>
+ <td> 8.8</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB45</td>
+ <td>72</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>A</td>
+ <td align="right">3</td>
+ <td align="right">598.185</td>
+ <td> 8.9</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB46</td>
+ <td>32</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>CIE</td>
+ <td>C</td>
+ <td>A</td>
+ <td align="right">3</td>
+ <td align="right">824.974</td>
+ <td> 8.7</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB47</td>
+ <td>74</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>CIE</td>
+ <td>C</td>
+ <td>A</td>
+ <td align="right">3</td>
+ <td align="right">495.046</td>
+ <td> 9.4</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB48</td>
+ <td>54</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>CIE</td>
+ <td>C</td>
+ <td>A</td>
+ <td align="right">3</td>
+ <td align="right">667.036</td>
+ <td> 9.4</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB49</td>
+ <td>24</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>A</td>
+ <td align="right">3</td>
+ <td align="right">760.367</td>
+ <td> 9.2</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB50</td>
+ <td>9</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>A</td>
+ <td align="right">3</td>
+ <td align="right">701.152</td>
+ <td> 9.2</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB51</td>
+ <td>66</td>
+ <td>DBA/2J</td>
+ <td>NO</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>C</td>
+ <td>B</td>
+ <td align="right">3</td>
+ <td align="right">579.22</td>
+ <td> 8.3</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB52</td>
+ <td>44</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>CIE</td>
+ <td>C</td>
+ <td>B</td>
+ <td align="right">3</td>
+ <td align="right">636.091</td>
+ <td> 9.4</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB53</td>
+ <td>34</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>B</td>
+ <td align="right">3</td>
+ <td align="right">739.127</td>
+ <td> 9.5</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB54</td>
+ <td>7</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>B</td>
+ <td align="right">3</td>
+ <td align="right">667.933</td>
+ <td> 9.2</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB55</td>
+ <td>36</td>
+ <td>C57BL/6J</td>
+ <td>NO</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">3</td>
+ <td align="right">605.937</td>
+ <td> 9.2</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB56</td>
+ <td>43</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">3</td>
+ <td align="right">639.161</td>
+ <td> 9.5</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB57</td>
+ <td>70</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>7d</td>
+ <td>CIE</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">3</td>
+ <td align="right">630.735</td>
+ <td> 9.4</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB58</td>
+ <td>59</td>
+ <td>DBA/2J</td>
+ <td>NO</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">3</td>
+ <td align="right">548.647</td>
+ <td> 9.5</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB59</td>
+ <td>15</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>14d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">3</td>
+ <td align="right">689.793</td>
+ <td> 9.4</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB60</td>
+ <td>27</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">3</td>
+ <td align="right">580.462</td>
+ <td> 9.4</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB61</td>
+ <td>30</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">3</td>
+ <td align="right">577.826</td>
+ <td> 8.2</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB62</td>
+ <td>57</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">3</td>
+ <td align="right">581.164</td>
+ <td> 9.0</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB63</td>
+ <td>38</td>
+ <td>C57BL/6J</td>
+ <td>PZ</td>
+ <td>3d</td>
+ <td>CIE</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">3</td>
+ <td align="right">748.421</td>
+ <td> 8.6</td>
+ </tr>
+ <tr height="15">
+ <td height="15" style="height:20px;">MB64</td>
+ <td>47</td>
+ <td>DBA/2J</td>
+ <td>PZ</td>
+ <td>8h</td>
+ <td>AIR</td>
+ <td>C</td>
+ <td>C</td>
+ <td align="right">3</td>
+ <td align="right">747.345</td>
+ <td> 8.5</td>
+ </tr>
+ </tbody>
+</table>
diff --git a/general/datasets/Inia_uthsc_mid_affymta1_apr17/specifics.rtf b/general/datasets/Inia_uthsc_mid_affymta1_apr17/specifics.rtf new file mode 100644 index 0000000..729d375 --- /dev/null +++ b/general/datasets/Inia_uthsc_mid_affymta1_apr17/specifics.rtf @@ -0,0 +1 @@ +<p>SST-RMA Gene Level</p>
diff --git a/general/datasets/Inia_uthsc_mid_affymta1_apr17/summary.rtf b/general/datasets/Inia_uthsc_mid_affymta1_apr17/summary.rtf new file mode 100644 index 0000000..9baa040 --- /dev/null +++ b/general/datasets/Inia_uthsc_mid_affymta1_apr17/summary.rtf @@ -0,0 +1,31 @@ +<p><b>Overview:</b></p>
+
+<p>1. Treated and whole brains dissected at Medical University of South Carolina (Marcelo F. Lopez laboratory)</p>
+
+<p>2. Frozen brains sub-dissected at UTHSC (Megan K. Mulligan laboratory)</p>
+
+<p>3. RNA extraction (Qiagen RNeasy kit) at UTHSC (Mulligan and Williams laboratories)</p>
+
+<p>4. Hybridized to Affymetrix Clariom D (aka Affymetrix MTA 1.0 ST) array at UTHSC MRC (Lorne Rose, UTHSC Molecular Resource Center)</p>
+
+<p>5. Initial QC and normalization (COMBAT) at UTHSC (Megan K. Mulligan laboratory)</p>
+
+<p>6. Transcriptome entry and phenotype entry (Arthur Centeno, Megan K. Mulligan, and Robert W. Williams)</p>
+
+<p> </p>
+
+<p><b>Chronic ethanol exposure:</b></p>
+
+<p>Mice were allowed to self-administer alcohol (15% v/v vs. water) for 2 h a day (5 days a week) 6 weeks prior to treatment in order to establish baseline consumption. Access to 15% alcohol versus water started 30 min prior to the start of the dark cycle. Following establishment of baseline drinking, male mice representative of each strain were separated into groups to be exposed to either weekly cycles of CIE exposure (CIE group) or air control (AIR group) exposure. </p>
+
+<p> </p>
+
+<p>Mice assigned to the CIE treatment group were exposed to alcohol vapor for 16 h a day followed by 8 h of withdrawal for 4 days per week. Following the fourth vapor exposure, mice were given a 72-h abstinence/withdrawal period before resuming ethanol intake in the home cage for 5 days. Mice in the AIR control treatment group were similarly treated but exposed only to air in the inhalation chambers. This pattern of CIE or air control exposure followed by 5 days of ethanol self-administration was repeated for four cycles. A fifth cycle of CIE (or air) exposure followed the fourth ethanol intake evaluation period, and brain tissue was collected at multiple time points (8h, 3d, 7d, 14d) after the last cycle ended. Pyrazole (1 mmol/kg) was used to stabilize blood ethanol levels (BEC) and was administered to both CIE and AIR groups. A subset of mice received no pyrazole. </p>
+
+<p> </p>
+
+<p><b>Analysis:</b></p>
+
+<p>1. Normalization on Affymetrix Expression Console (SST-RMA Gene Level).</p>
+
+<p>2. Batch effect detected (RNA concentration dependent) and corrected in ComBat</p>
|