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authorPjotr Prins2022-12-04 12:33:42 -0600
committerPjotr Prins2022-12-04 12:33:42 -0600
commited00507ec707b70382a984844fd3aabe68a06398 (patch)
tree3690f93ca1d8b28fb286c4a168659abb8d64bfe5 /general
parented8dd992e69dac50d20d7207c73b5737c6b100fa (diff)
downloadgn-docs-ed00507ec707b70382a984844fd3aabe68a06398.tar.gz
Show list of up-to-date dependencies for GeneNetwork
Diffstat (limited to 'general')
-rw-r--r--general/environments/environments.md1750
1 files changed, 1734 insertions, 16 deletions
diff --git a/general/environments/environments.md b/general/environments/environments.md
index e516789..fb0eb22 100644
--- a/general/environments/environments.md
+++ b/general/environments/environments.md
@@ -1,18 +1,1736 @@
+# List system properties
+
+These are the software packages the GeneNetwork web-service currently uses.
+The list is generated by querying:
+
+```
+guix graph -L ~/guix-bioinformatics -L ~/guix-past genenetwork2|grep label > graph.txt
+sed 's/",//' graph.txt |cut -c 29- |sort|uniq > list.txt
+```
+
### System properties
-| Operating System | | | |
-|---|---|---|---|
-| Ubuntu | ubuntu-latest | [ubuntu](http://www.ubuntu.com) | Free software licenses (mainly GPL) |
-| **Database** | | | |
-| MariaDB | 10.X.XX | [http://www.mariadb.org/](http://www.mariadb.org/) | GPL (version 2) |
-| **Python** | | | |
-| Python | 3.8 | [http://www.python.org/](http://www.python.org/) | Python Software Foundation License |
-| Flask | 1.1.2 | [http://flask.pocoo.org/](http://flask.pocoo.org/) | BSD |
-| Jinja2 | 2.6 | [http://jinja.pocoo.org/](http://jinja.pocoo.org/ ) | BSD |
-| NumPy | 1.7.0 | [http://www.numpy.org/](http://www.numpy.org/) | BSD-new |
-| SciPy | 0.11.0 | [http://www.scipy.org/]([http://www.scipy.org/]) | BSD-new |
-| **JavaScript / CSS** | | | |
-| jQuery | 1.10.2 | [http://jquery.com/]([http://jquery.com/) | MIT |
-|Bootstrap | 3.3.0 | [http://getbootstrap.com/](http://getbootstrap.com/) | MIT License (Apache License 2.0 prior to 3.1.0) |
-| DataTables | 1.10.19 | [http://www.datatables.net/](http://www.datatables.net/) | MIT |
-| CKEditor | 4.13.0 | [http://ckeditor.com/](http://ckeditor.com/) | GPL, LGPL and MPL |
+Debian GNU/Linux 10 (buster)
+
+```
+aalib@1.4rc5
+acl@2.3.1
+alsa-lib@1.2.4
+alsa-topology-conf@1.2.4
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