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| -rw-r--r-- | general/environments/environments.md | 1750 |
1 files changed, 1734 insertions, 16 deletions
diff --git a/general/environments/environments.md b/general/environments/environments.md index e516789..fb0eb22 100644 --- a/general/environments/environments.md +++ b/general/environments/environments.md @@ -1,18 +1,1736 @@ +# List system properties + +These are the software packages the GeneNetwork web-service currently uses. +The list is generated by querying: + +``` +guix graph -L ~/guix-bioinformatics -L ~/guix-past genenetwork2|grep label > graph.txt +sed 's/",//' graph.txt |cut -c 29- |sort|uniq > list.txt +``` + ### System properties -| Operating System | | | | -|---|---|---|---| -| Ubuntu | ubuntu-latest | [ubuntu](http://www.ubuntu.com) | Free software licenses (mainly GPL) | -| **Database** | | | | -| MariaDB | 10.X.XX | [http://www.mariadb.org/](http://www.mariadb.org/) | GPL (version 2) | -| **Python** | | | | -| Python | 3.8 | [http://www.python.org/](http://www.python.org/) | Python Software Foundation License | -| Flask | 1.1.2 | [http://flask.pocoo.org/](http://flask.pocoo.org/) | BSD | -| Jinja2 | 2.6 | [http://jinja.pocoo.org/](http://jinja.pocoo.org/ ) | BSD | -| NumPy | 1.7.0 | [http://www.numpy.org/](http://www.numpy.org/) | BSD-new | -| SciPy | 0.11.0 | [http://www.scipy.org/]([http://www.scipy.org/]) | BSD-new | -| **JavaScript / CSS** | | | | -| jQuery | 1.10.2 | [http://jquery.com/]([http://jquery.com/) | MIT | -|Bootstrap | 3.3.0 | [http://getbootstrap.com/](http://getbootstrap.com/) | MIT License (Apache License 2.0 prior to 3.1.0) | -| DataTables | 1.10.19 | [http://www.datatables.net/](http://www.datatables.net/) | MIT | -| CKEditor | 4.13.0 | [http://ckeditor.com/](http://ckeditor.com/) | GPL, LGPL and MPL | +Debian GNU/Linux 10 (buster) + +``` +aalib@1.4rc5 +acl@2.3.1 +alsa-lib@1.2.4 +alsa-topology-conf@1.2.4 +alsa-ucm-conf@1.2.4 +ao@1.2.2-5-g20dc8ed +apr@1.7.0 +apr-util@1.6.1 +argon2@20190702 +asciidoc@9.1.0 +aspell@0.60.8 +atk@2.36.0 +atkmm@2.28.1 +at-spi2-atk@2.38.0 +at-spi2-core@2.40.0 +attr@2.5.1 +autoconf@2.69 +autoconf-archive@2021.02.19 +autoconf-wrapper@2.69 +automake@1.16.3 +autotrace@0.40.0-20190624.59 +avahi@0.8 +bash@5.1.8 +bash-completion@2.8 +bash-mesboot0@2.05b +bash-mesboot@4.4 +bash-minimal@5.1.8 +bash-static@5.1.8 +bc@1.07.1 +bdb@5.3.28 +bdb@6.2.32 +binutils@2.37 +binutils-cross-boot0@2.37 +binutils-mesboot0@2.14 +binutils-mesboot1@2.14 +binutils-mesboot@2.20.1a +bison@3.7.6 +bison-boot0@3.7.6 +bluez@5.64 +boost@1.77.0 +bootar@1a +bootstrap-mes@0 +bootstrap-mescc-tools@0.5.2 +bootstrap-mes-rewired@0.19 +brotli@1.0.9 +bubblewrap@0.6.1 +bzip2@1.0.8 +bzip2-boot0@1.0.8 +bzip2-mesboot@1.0.8 +cabal-doctest@1.0.8 +cairo@1.16.0 +cairomm@1.14.2 +c-ares@1.17.2 +catch@1.3.5 +catch2@1.12.2 +cdparanoia@10.2 +check@0.15.2 +chromaprint@1.5.1 +cmake-minimal@3.21.4 +cmark-gfm@0.29.0.gfm.2 +cmocka@1.1.5 +colord-minimal@1.4.5 +config@0.0.0-1.c8ddc84 +coreutils@8.32 +coreutils-boot0@8.32 +coreutils-mesboot0@5.0 +coreutils-mesboot@8.32 +coreutils-minimal@8.32 +cpphs@1.20.9.1 +cppunit@1.15.1 +csvdiff@1.4.0 +cunit@2.1-3 +cups@2.3.3op2 +cups-filters@1.28.9 +cups-minimal@2.3.3op2 +curl@7.79.1 +cyrus-sasl@2.1.27 +dash@0.5.11.5 +datefudge@1.23 +dav1d@0.9.2 +dblatex@0.3.12 +dbus@1.12.20 +dbus-glib@0.110 +dconf@0.40.0 +dejagnu@1.6.2 +diffutils@3.8 +diffutils-boot0@3.8 +directfb@1.7.7 +docbook2x@0.8.8 +docbook-xml@4.1.2 +docbook-xml@4.2 +docbook-xml@4.3 +docbook-xml@4.4 +docbook-xml@4.5 +docbook-xsl@1.79.2 +double-conversion@3.1.5 +doxygen@1.9.1 +ed@1.17 +eigen@3.4.0 +elfutils@0.183 +elogind@246.10 +enchant@1.6.0 +enchant@2.2.15 +esbuild@0.14.0 +eudev@3.2.11 +expat@2.4.1 +expect@5.45.4 +extra-cmake-modules@5.98.0 +faad2@2.8.8 +fcitx@4.2.9.9 +ffmpeg@4.4.2 +fftw@3.3.8 +fftwf@3.3.8 +file@5.39 +file-boot0@5.39 +findutils-boot0@4.8.0 +flac@1.3.3 +flex@2.6.4 +flite@2.2 +fluidsynth@2.2.4 +flux@1.4.4 +fontconfig-minimal@2.13.94 +font-dejavu@2.37 +fontforge@20201107 +font-ghostscript@8.11 +freeglut@3.2.2 +freetype@2.10.4 +frei0r-plugins@1.7.0 +fribidi@1.0.9 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