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author | Munyoki Kilyungi | 2023-10-24 15:52:48 +0300 |
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committer | Munyoki Kilyungi | 2023-10-24 15:52:48 +0300 |
commit | da978ab9a240f9650972cabbbf4d4ce04f00f48c (patch) | |
tree | eb904e8969de358df807e99e5682b44fcc8a7bd0 | |
parent | d74b29d5e0238d687be43c2357658103125e670b (diff) | |
download | gn-docs-da978ab9a240f9650972cabbbf4d4ce04f00f48c.tar.gz |
Update GN3 API documentation.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
-rw-r--r-- | api/GN2-API-documentation.md | 128 |
1 files changed, 128 insertions, 0 deletions
diff --git a/api/GN2-API-documentation.md b/api/GN2-API-documentation.md index b2e7bc4..70342dc 100644 --- a/api/GN2-API-documentation.md +++ b/api/GN2-API-documentation.md @@ -177,3 +177,131 @@ Example Results: "name": "HUB Winter Gsor families (2014-2022)" } ``` + + +## GET /metadata/datasets/:name + +Fetch information about a given dataset given it's name. + +``` +curl "localhost:8080/api/metadata/datasets/IBR_M_0204_M" +``` + +or + +``` +curl "localhost:8080/api/metadata/datasets/GN11" +``` + +Example Results: + +``` +{ + "@context": { + "accessRights": "dct:accessRights", + "accessionId": "dct:identifier", + "acknowledgement": "gnt:hasAcknowledgement", + "altLabel": "skos:altLabel", + "caseInfo": "gnt:hasCaseInfo", + "classifiedUnder": "xkos:classifiedUnder", + "contactPoint": "dcat:contactPoint", + "created": "dct:created", + "data": "@graph", + "dcat": "http://www.w3.org/ns/dcat#", + "dct": "http://purl.org/dc/terms/", + "description": "dct:description", + "ex": "http://example.org/stuff/1.0/", + "experimentDesignInfo": "gnt:hasExperimentDesignInfo", + "foaf": "http://xmlns.com/foaf/0.1/", + "geoSeriesId": "gnt:hasGeoSeriesId", + "gnt": "http://genenetwork.org/term/", + "id": "@id", + "inbredSet": "ex:belongsToInbredSet", + "info": "ex:info", + "label": "rdfs:label", + "normalization": "gnt:usesNormalization", + "notes": "gnt:hasNotes", + "organization": "foaf:Organization", + "platform": "ex:platform", + "prefLabel": "skos:prefLabel", + "processingInfo": "gnt:hasDataProcessingInfo", + "rdfs": "http://www.w3.org/2000/01/rdf-schema#", + "skos": "http://www.w3.org/2004/02/skos/core#", + "tissue": "ex:tissue", + "title": "dct:title", + "type": "@type", + "xkos": "http://rdf-vocabulary.ddialliance.org/xkos#" + }, + "accessionId": "GN11", + "contactPoint": "Michael Miles", + "id": "http://genenetwork.org/id/Ibr_m_0204_m", + "inbredSet": "BXD Family", + "label": "IBR_M_0204_M", + "normalization": "MAS5", + "platform": { + "id": "http://genenetwork.org/id/platformMoe430", + "info": "[...]", + "label": "Affy Mouse Genome 430A, 430B, 430A 2.0 (GPL339,GPL340)", + "prefLabel": "MOE430", + "type": "http://genenetwork.org/category/geneChip" + }, + "tissue": { + "id": "http://genenetwork.org/id/tissueBrn", + "info": "[...]", + "label": "Brain mRNA", + "type": "http://genenetwork.org/category/tissue" + }, + "type": "dcat:Dataset" +} +``` + +## GET /metadata/datasets/:group/list + +List datasets that belong to a given group. + +*Parameters:* page(default=0), per-page(default=10) + +``` +curl "localhost:8080/api/metadata/datasets/BXD/list" +``` + +Example Results: + +``` +{ + "@context": { + "classifiedUnder": "xkos:classifiedUnder", + "created": "dct:created", + "currentPage": "ex:currentPage", + "data": "@graph", + "dct": "http://purl.org/dc/terms/", + "ex": "http://example.org/stuff/1.0/", + "id": "@id", + "name": "rdfs:label", + "pages": "ex:totalCount", + "rdfs": "http://www.w3.org/2000/01/rdf-schema#", + "result": "ex:result", + "resultItem": "ex:resultType", + "results": "ex:items", + "title": "dct:title", + "type": "@type", + "xkos": "http://rdf-vocabulary.ddialliance.org/xkos#" + }, + "currentPage": 0, + "id": "ex:result", + "pages": 42, + "results": [ + { + "created": "2001-09-22", + "name": "DBA2J-ONH-1212", + "title": "Molecular clustering identifies complement and endothelin induction as early events in a mouse model of glaucoma." + }, + [...] + { + "created": "2003-06-01", + "name": "Br_U_0603_M" + } + ], + "type": "resultItem" +} +``` |