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# API Endpoints
The following end-points are available to all users. The result of every query is json-ld.
## GET /metadata/species
Returns a list of species.
```
curl localhost:8080/api/metadata/species
```
Example Result:
```
{
"@context": {
"alternateName": "skos:altLabel",
"data": "@graph",
"family": "gnt:family",
"fullName": "skos:prefLabel",
"gnt": "http://genenetwork.org/term/",
"id": "@id",
"name": "rdfs:label",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"shortName": "gnt:shortName",
"skos": "http://www.w3.org/2004/02/skos/core#",
"taxonomicId": "skos:notation",
"type": "@type"
},
"data": [
{
"alternateName": "Human",
"family": "Vertebrates",
"fullName": "Human (Homo sapiens, hg19)",
"id": "http://genenetwork.org/id/Homo_sapiens",
"name": "Homo sapiens",
"shortName": "human",
"taxonomicId": {
"id": "http://purl.uniprot.org/taxonomy/9606"
}
},
[...]
{
"alternateName": "Soybean",
"family": "Plants",
"fullName": "Soybean (Glycine max, US DOE JGI-PGF v2 2021)",
"id": "http://genenetwork.org/id/Glycine_max",
"name": "Glycine max",
"shortName": "soybean",
"taxonomicId": {
"id": "http://purl.uniprot.org/taxonomy/3847"
}
}
]
}
```
## GET /metadata/species/:name
Get a list of species with data available in GN.
```
curl "localhost:8080/api/metadata/species/bat"
```
Example Result:
```
{
"@context": {
"alternateName": "skos:altLabel",
"data": "@graph",
"family": "gnt:family",
"fullName": "skos:prefLabel",
"gnt": "http://genenetwork.org/term/",
"id": "@id",
"name": "rdfs:label",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"shortName": "gnt:shortName",
"skos": "http://www.w3.org/2004/02/skos/core#",
"taxonomicId": "skos:notation",
"type": "@type"
},
"alternateName": "Bat (Glossophaga soricina)",
"family": "Vertebrates",
"fullName": "Bat (Glossophaga soricina, gsor23)",
"id": "http://genenetwork.org/id/Glossophaga_soricina",
"name": "Glossophaga soricina",
"shortName": "bat",
"taxonomicId": {
"id": "http://purl.uniprot.org/taxonomy/27638"
}
}
```
## GET /metadata/groups
Fetch all groups.
```
curl "localhost:8080/api/metadata/groups"
```
Example Results:
```
{
"@context": {
"code": "gnt:code",
"data": "@graph",
"family": "gnt:family",
"fullName": "skos:prefLabel",
"geneticType": "gnt:geneticType",
"gnt": "http://genenetwork.org/term/",
"id": "@id",
"mappingMethod": "gnt:mappingMethod",
"name": "rdfs:label",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"shortName": "gnt:shortName",
"skos": "http://www.w3.org/2004/02/skos/core#",
"type": "@type"
},
"data": [
{
"code": "BDG",
"family": "BXD Individual Data",
"fullName": "DOD-BXD-GWI",
"geneticType": "intercross",
"id": "http://genenetwork.org/id/setDod-bxd-gwi",
"mappingMethod": "qtlreaper",
"name": "BXD DOD Gulf War Illness"
},
[...]
{
"code": "CAN",
"fullName": "CANDLE",
"id": "http://genenetwork.org/id/setCandle",
"name": "Child Development: CANDLE Cohort with Genotypes (TUCI/UTHSC)"
}
]
}
```
## GET /metadata/groups/:name
Fetch information about a given group given a species' name.
```
curl "localhost:8080/api/metadata/groups/bat"
```
Example Results:
```
{
"@context": {
"code": "gnt:code",
"data": "@graph",
"family": "gnt:family",
"fullName": "skos:prefLabel",
"geneticType": "gnt:geneticType",
"gnt": "http://genenetwork.org/term/",
"id": "@id",
"mappingMethod": "gnt:mappingMethod",
"name": "rdfs:label",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"shortName": "gnt:shortName",
"skos": "http://www.w3.org/2004/02/skos/core#",
"type": "@type"
},
"code": "GSO",
"fullName": "GSO",
"id": "http://genenetwork.org/id/setGso",
"mappingMethod": "qtlreaper",
"name": "HUB Winter Gsor families (2014-2022)"
}
```
|
