Update auto-generated docs

9 files changed, 87 insertions, 201 deletions

diff --git a/rdf-documentation/dump-gene-chip.md b/rdf-documentation/dump-gene-chip.md
index e25573a..80217d8 100644
--- a/rdf-documentation/dump-gene-chip.md
+++ b/rdf-documentation/dump-gene-chip.md
@@ -20,12 +20,13 @@ gn:platform_genechip_name -> gn-term:geoPlatform -> geoSeries:GeneChip(GeoPlatfo
 Here's an example query:
 
 ```sparql
-@prefix geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=> .
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/term/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+PREFIX geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=> 
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX dct: <> 
+PREFIX gn-term: <http://genenetwork.org/term/> 
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:platform .
@@ -70,12 +71,13 @@ gn:Probesetfreeze_name_ -> gn-term:datasetOfInbredSet -> gn:inbredSet_inbredset_
 Here's an example query:
 
 ```sparql
-@prefix geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=> .
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/term/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+PREFIX geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=> 
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX dct: <> 
+PREFIX gn-term: <http://genenetwork.org/term/> 
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:probesetDataset .
diff --git a/rdf-documentation/dump-genotype.md b/rdf-documentation/dump-genotype.md
index cc35bc4..a27c230 100644
--- a/rdf-documentation/dump-genotype.md
+++ b/rdf-documentation/dump-genotype.md
@@ -23,11 +23,12 @@ gn:Genofreeze_name_ -> gn-term:datasetOfInbredSet -> gn:_inbredset_inbredsetname
 Here's an example query:
 
 ```sparql
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/term/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+PREFIX dct: <http://purl.org/dc/terms/> 
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX gn-term: <http://genenetwork.org/term/> 
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:genotypeDataset .
@@ -79,11 +80,12 @@ gn:Abbrev -> gn-term:cM -> "Chr_mm8"^^xsd:int
 Here's an example query:
 
 ```sparql
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/term/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+PREFIX dct: <http://purl.org/dc/terms/> 
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX gn-term: <http://genenetwork.org/term/> 
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:genotype .
diff --git a/rdf-documentation/dump-info-pages.md b/rdf-documentation/dump-info-pages.md
index 7cd2ecd..9cf7401 100644
--- a/rdf-documentation/dump-info-pages.md
+++ b/rdf-documentation/dump-info-pages.md
@@ -45,14 +45,14 @@ gn:Infofiles_infopagename_ -> gn-term:acknowledgment -> DatasetsAcknowledgment
 Here's an example query:
 
 ```sparql
-@prefix foaf: <http://xmlns.com/foaf/0.1/> .
-@prefix geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=> .
-@prefix gn-term: <http://genenetwork.org/term/> .
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix taxon: <http://purl.uniprot.org/taxonomy/> .
-@prefix dct: <http://purl.org/dc/terms/> .
+PREFIX foaf: <http://xmlns.com/foaf/0.1/> 
+PREFIX geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=> 
+PREFIX gn-term: <http://genenetwork.org/term/> 
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX taxon: <http://purl.uniprot.org/taxonomy/> 
+PREFIX dct: <http://purl.org/dc/terms/> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:dataset .
@@ -117,14 +117,14 @@ gn:investigator_investigators_firstname_investigators_lastname_investigators_ema
 Here's an example query:
 
 ```sparql
-@prefix foaf: <http://xmlns.com/foaf/0.1/> .
-@prefix geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=> .
-@prefix gn-term: <http://genenetwork.org/term/> .
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix taxon: <http://purl.uniprot.org/taxonomy/> .
-@prefix dct: <http://purl.org/dc/terms/> .
+PREFIX foaf: <http://xmlns.com/foaf/0.1/> 
+PREFIX geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=> 
+PREFIX gn-term: <http://genenetwork.org/term/> 
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX taxon: <http://purl.uniprot.org/taxonomy/> 
+PREFIX dct: <http://purl.org/dc/terms/> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type foaf:Person .
diff --git a/rdf-documentation/dump-phenotype.md b/rdf-documentation/dump-phenotype.md
index 62e5488..c36861b 100644
--- a/rdf-documentation/dump-phenotype.md
+++ b/rdf-documentation/dump-phenotype.md
@@ -17,18 +17,19 @@ gn:Publishfreeze_name_ -> rdf:type -> gn:phenotypeDataset
 gn:Publishfreeze_name_ -> gn-term:name -> PublishFreeze(Name) 
 gn:Publishfreeze_name_ -> gn-term:fullName -> PublishFreeze(FullName) 
 gn:Publishfreeze_name_ -> gn-term:shortName -> PublishFreeze(ShortName) 
-gn:Publishfreeze_name_ -> dc-termt:created -> "PublishFreeze(CreateTime)"^^xsd:date 
+gn:Publishfreeze_name_ -> dct:created -> "PublishFreeze(CreateTime)"^^xsd:date 
 gn:Publishfreeze_name_ -> gn-term:datasetOfInbredSet -> gn:inbredSet_inbredset_inbredsetname 
 ```
 Here's an example query:
 
 ```sparql
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/terms/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
-@prefix pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> .
+PREFIX dct: <http://purl.org/dc/terms/> 
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX gn-term: <http://genenetwork.org/terms/> 
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> 
+PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:phenotypeDataset .
@@ -45,7 +46,7 @@ gn:B6d2f2_psupublish rdf:type gn:phenotypeDataset .
 gn:B6d2f2_psupublish gn-term:name "B6D2F2-PSUPublish" .
 gn:B6d2f2_psupublish gn-term:fullName "B6D2F2 PSU Phenotypes" .
 gn:B6d2f2_psupublish gn-term:shortName "B6D2F2 PSU Publish" .
-gn:B6d2f2_psupublish dc-termt:created "2015-03-18"^^xsd:date .
+gn:B6d2f2_psupublish dct:created "2015-03-18"^^xsd:date .
 gn:B6d2f2_psupublish gn-term:datasetOfInbredSet gn:inbredSet_b6d2f2-psu .
 ```
 
@@ -85,12 +86,13 @@ gn:Abbrev -> gn-term:phenotypeOfPublication -> pubmed:pmid
 Here's an example query:
 
 ```sparql
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/terms/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
-@prefix pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> .
+PREFIX dct: <http://purl.org/dc/terms/> 
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX gn-term: <http://genenetwork.org/terms/> 
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> 
+PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:phenotype .
diff --git a/rdf-documentation/dump-probeset-metadata.md b/rdf-documentation/dump-probeset-metadata.md
deleted file mode 100644
index b47ce20..0000000
--- a/rdf-documentation/dump-probeset-metadata.md
+++ /dev/null
@@ -1,58 +0,0 @@
-# Probeset Metadata
-## 'dump-probeset-metadata'
-
-
-## Generated Triples:
-
-The following SQL query was executed:
-
-```sql
-SELECT CONCAT(ProbeSetFreeze.Name,':',IFNULL(ProbeSet.Name, ProbeSet.Id)) AS ProbeSetName, IFNULL(ProbeSet.Name, ProbeSet.Id) AS name, ProbeSetFreeze.Name, IFNULL(ProbeSetXRef.mean, '') AS mean, IFNULL(ProbeSetXRef.se, '') AS se, ProbeSetXRef.Locus, IFNULL(ProbeSetXRef.LRS, '') AS LRS, IFNULL(ProbeSetXRef.pValue, '') AS pValue, IFNULL(ProbeSetXRef.additive, '') AS additive, IFNULL(ProbeSetXRef.h2, '') AS h2 FROM ProbeSetXRef LEFT JOIN ProbeSet ON ProbeSetXRef.ProbeSetId = ProbeSet.Id LEFT JOIN ProbeSetFreeze ON ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id WHERE ProbeSetFreeze.public > 0 AND ProbeSetFreeze.confidentiality < 1
-```
-
-The above query results to triples that have the form:
-
-```text
-gn:probesetData_probesetname -> rdf:type -> gn:probesetData 
-gn:probesetData_probesetname -> gn-term:hasProbeset -> probeset:name 
-gn:probesetData_probesetname -> gn-term:probesetOfDataset -> probeset:ProbeSetFreeze_Name_ 
-gn:probesetData_probesetname -> gn-term:mean -> "mean"^^xsd:double 
-gn:probesetData_probesetname -> gn-term:se -> "se"^^xsd:double 
-gn:probesetData_probesetname -> gn-term:locus -> ProbeSetXRef(Locus) 
-gn:probesetData_probesetname -> gn:LRS -> "LRS"^^xsd:double 
-gn:probesetData_probesetname -> gn-term:pValue -> "pValue"^^xsd:double 
-gn:probesetData_probesetname -> gn-term:additive -> "additive"^^xsd:double 
-gn:probesetData_probesetname -> gn-term:h2 -> "h2"^^xsd:float 
-```
-Here's an example query:
-
-```sparql
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/id/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
-
-SELECT ?s ?p ?o WHERE { 
-    ?s rdf:type gn:probesetData .
-    ?s gn-term:hasProbeset probeset:100001_at .
-    ?s gn-term:probesetOfDataset probeset:HC_U_0304_R .
-    ?s gn-term:mean #{"8.14033666666667"^^xsd:double}# .
-    ?s ?p ?o .
-}
-```
-
-Expected Result:
-
-```rdf
-gn:probesetData_hc_u_0304_r:100001_at rdf:type gn:probesetData .
-gn:probesetData_hc_u_0304_r:100001_at gn-term:hasProbeset probeset:100001_at .
-gn:probesetData_hc_u_0304_r:100001_at gn-term:probesetOfDataset probeset:HC_U_0304_R .
-gn:probesetData_hc_u_0304_r:100001_at gn-term:mean "8.14033666666667"^^xsd:double .
-gn:probesetData_hc_u_0304_r:100001_at gn-term:se "0.023595817125580502"^^xsd:double .
-gn:probesetData_hc_u_0304_r:100001_at gn-term:locus "rsm10000021399" .
-gn:probesetData_hc_u_0304_r:100001_at gn:LRS "12.2805314427567"^^xsd:double .
-gn:probesetData_hc_u_0304_r:100001_at gn-term:pValue "0.118"^^xsd:double .
-gn:probesetData_hc_u_0304_r:100001_at gn-term:additive "0.0803547619047631"^^xsd:double .
-```
-
diff --git a/rdf-documentation/dump-probeset.md b/rdf-documentation/dump-probeset.md
deleted file mode 100644
index 5b4de63..0000000
--- a/rdf-documentation/dump-probeset.md
+++ /dev/null
@@ -1,62 +0,0 @@
-# ProbeSet Metadata
-## 'dump-probeset'
-
-## Schema Triples:
-
-```text
-gn-term:name -> rdfs:range -> rdfs:Literal
-gn-term:probeset -> rdfs:range -> rdfs:Literal
-```
-## Generated Triples:
-
-The following SQL query was executed:
-
-```sql
-SELECT IFNULL(NULLIF(TRIM(ProbeSet.Name), ''), ProbeSet.Id) AS name, GeneChip.Name, ProbeSet.Name, ProbeSet.Symbol, ProbeSet.description, ProbeSet.Chr, IFNULL(ProbeSet.Mb, '') AS Mb, ProbeSet.BlatSeq, ProbeSet.TargetSeq, ProbeSet.UniProtID FROM ProbeSet LEFT JOIN GeneChip ON GeneChip.Id = ProbeSet.ChipId
-```
-
-The above query results to triples that have the form:
-
-```text
-probeset:name -> rdf:type -> gn-id:probeset 
-probeset:name -> gn-term:chipOf -> gn-id:platform_genechip_name 
-probeset:name -> gn-term:name -> ProbeSet(Name) 
-probeset:name -> gn-term:symbol -> ProbeSet(Symbol) 
-probeset:name -> gn-term:description -> ProbeSetdescription 
-probeset:name -> gn-term:chr -> ProbeSet(Chr) 
-probeset:name -> gn-term:mb -> "Mb"^^xsd:double 
-probeset:name -> gn-term:blatSeq -> ProbeSetBlatSeq 
-probeset:name -> gn-term:targetSeq -> ProbeSetTargetSeq 
-probeset:name -> gn-term:uniProtReference -> uniprot:ProbeSet(UniProtID) 
-```
-Here's an example query:
-
-```sparql
-@prefix probeset: <http://genenetwork.org/probeset/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-r .
-@prefix uniprot: <http://purl.uniprot.org/uniprot/> .
-
-SELECT ?s ?p ?o WHERE { 
-    ?s rdf:type gn-id:probeset .
-    ?s gn-term:chipOf gn-id:platform_mg_u74av2 .
-    ?s gn-term:name "MG_U74AV2" .
-    ?s gn-term:symbol "Cd3g" .
-    ?s ?p ?o .
-}
-```
-
-Expected Result:
-
-```rdf
-probeset:100001_at rdf:type gn-id:probeset .
-probeset:100001_at gn-term:chipOf gn-id:platform_mg_u74av2 .
-probeset:100001_at gn-term:name "MG_U74AV2" .
-probeset:100001_at gn-term:symbol "Cd3g" .
-probeset:100001_at gn-term:description "CD3d antigen, gamma polypeptide" .
-probeset:100001_at gn-term:chr "9" .
-probeset:100001_at gn-term:mb "44.970689"^^xsd:double .
-probeset:100001_at gn-term:blatSeq "CTCTGTTGCAAAATGAACAGCTGTACAGCCCCTCAAGGACCGGGAATATGACCAGTACAGCCATCTCCAAGGAAACCAACTGAGGAAGAAGTGAACTCAGCAGGACTCAGGGTGTCCCCACAATGCATTTTGGAGAGAGCCCAGACTGCAAGCAGAGAGGAAGAACTGAGGAAAACAAGCACAGCGTGGTGTT" .
-probeset:100001_at gn-term:targetSeq "ctctgttgcaaaatgaacagctgtaccagcccctcaaggaccgggaatatgaccagtacagccatctccaaggaaaccaactgaggaagaagtgaactcagcaggactcagggtgtccccccttntatccagcacccagaatcaaaacaatgcattttggagagagcccagtagagagattttcaaccctacaggtagactgcaagcagagaggaagaactgtcaaagaaattttggtcttttttttttttttnncaaaataaaataaaagcttggaggagccagtggtatgantnnnnnntgnancanttgtcaaccttgtttggggttnncagcaccccacccccagaccccccaaaaaaattcagtgaaggaaaacaagcacagcgtggtgtt" .
-```
-
diff --git a/rdf-documentation/dump-publication.md b/rdf-documentation/dump-publication.md
index a40b597..90a366c 100644
--- a/rdf-documentation/dump-publication.md
+++ b/rdf-documentation/dump-publication.md
@@ -27,11 +27,11 @@ pubmed:pmid -> gn:author -> PublicationAuthors
 Here's an example query:
 
 ```sparql
-@prefix gn-term: <http://genenetwork.org/terms/> .
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
+PREFIX gn-term: <http://genenetwork.org/terms/> 
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:publication .
diff --git a/rdf-documentation/dump-species-metadata.md b/rdf-documentation/dump-species-metadata.md
index f64232f..31ad4e2 100644
--- a/rdf-documentation/dump-species-metadata.md
+++ b/rdf-documentation/dump-species-metadata.md
@@ -23,11 +23,11 @@ gn:Species_fullname -> gn-term:organism -> taxon:Species(TaxonomyId)
 Here's an example query:
 
 ```sparql
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/term/> .
-@prefix rdf: <https://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix taxon: <http://purl.uniprot.org/taxonomy/> .
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX gn-term: <http://genenetwork.org/term/> 
+PREFIX rdf: <https://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX taxon: <http://purl.uniprot.org/taxonomy/> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:species .
@@ -73,11 +73,11 @@ gn:Strainname -> gn-term:symbol -> Strain(Symbol)
 Here's an example query:
 
 ```sparql
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/term/> .
-@prefix rdf: <https://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix taxon: <http://purl.uniprot.org/taxonomy/> .
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX gn-term: <http://genenetwork.org/term/> 
+PREFIX rdf: <https://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX taxon: <http://purl.uniprot.org/taxonomy/> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:strain .
@@ -116,11 +116,11 @@ gn:mappingMethod_mappingmethod_name -> rdf:type -> gn:mappingMethod
 Here's an example query:
 
 ```sparql
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/term/> .
-@prefix rdf: <https://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix taxon: <http://purl.uniprot.org/taxonomy/> .
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX gn-term: <http://genenetwork.org/term/> 
+PREFIX rdf: <https://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX taxon: <http://purl.uniprot.org/taxonomy/> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:mappingMethod .
@@ -155,11 +155,11 @@ gn:avgmethod_avgmethod_name -> gn-term:normalization -> AvgMethod(Normalization)
 Here's an example query:
 
 ```sparql
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/term/> .
-@prefix rdf: <https://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix taxon: <http://purl.uniprot.org/taxonomy/> .
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX gn-term: <http://genenetwork.org/term/> 
+PREFIX rdf: <https://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX taxon: <http://purl.uniprot.org/taxonomy/> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:avgMethod .
diff --git a/rdf-documentation/dump-tissue.md b/rdf-documentation/dump-tissue.md
index 12271e8..6306399 100644
--- a/rdf-documentation/dump-tissue.md
+++ b/rdf-documentation/dump-tissue.md
@@ -19,10 +19,10 @@ gn:tissue_tissue_short_name -> gn-term:name -> Tissue(Name)
 Here's an example query:
 
 ```sparql
-@prefix gn: <http://genenetwork.org/id/> .
-@prefix gn-term: <http://genenetwork.org/terms/> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
+PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX gn-term: <http://genenetwork.org/terms/> 
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
 
 SELECT ?s ?p ?o WHERE { 
     ?s rdf:type gn:tissue .