diff options
Diffstat (limited to 'rdf-documentation/dump-phenotype.md')
| -rw-r--r-- | rdf-documentation/dump-phenotype.md | 30 |
1 files changed, 16 insertions, 14 deletions
diff --git a/rdf-documentation/dump-phenotype.md b/rdf-documentation/dump-phenotype.md index 62e5488..c36861b 100644 --- a/rdf-documentation/dump-phenotype.md +++ b/rdf-documentation/dump-phenotype.md @@ -17,18 +17,19 @@ gn:Publishfreeze_name_ -> rdf:type -> gn:phenotypeDataset gn:Publishfreeze_name_ -> gn-term:name -> PublishFreeze(Name) gn:Publishfreeze_name_ -> gn-term:fullName -> PublishFreeze(FullName) gn:Publishfreeze_name_ -> gn-term:shortName -> PublishFreeze(ShortName) -gn:Publishfreeze_name_ -> dc-termt:created -> "PublishFreeze(CreateTime)"^^xsd:date +gn:Publishfreeze_name_ -> dct:created -> "PublishFreeze(CreateTime)"^^xsd:date gn:Publishfreeze_name_ -> gn-term:datasetOfInbredSet -> gn:inbredSet_inbredset_inbredsetname ``` Here's an example query: ```sparql -@prefix gn: <http://genenetwork.org/id/> . -@prefix gn-term: <http://genenetwork.org/terms/> . -@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . -@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . -@prefix xsd: <http://www.w3.org/2001/XMLSchema#> . -@prefix pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> . +PREFIX dct: <http://purl.org/dc/terms/> +PREFIX gn: <http://genenetwork.org/id/> +PREFIX gn-term: <http://genenetwork.org/terms/> +PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> +PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> +PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> +PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> SELECT ?s ?p ?o WHERE { ?s rdf:type gn:phenotypeDataset . @@ -45,7 +46,7 @@ gn:B6d2f2_psupublish rdf:type gn:phenotypeDataset . gn:B6d2f2_psupublish gn-term:name "B6D2F2-PSUPublish" . gn:B6d2f2_psupublish gn-term:fullName "B6D2F2 PSU Phenotypes" . gn:B6d2f2_psupublish gn-term:shortName "B6D2F2 PSU Publish" . -gn:B6d2f2_psupublish dc-termt:created "2015-03-18"^^xsd:date . +gn:B6d2f2_psupublish dct:created "2015-03-18"^^xsd:date . gn:B6d2f2_psupublish gn-term:datasetOfInbredSet gn:inbredSet_b6d2f2-psu . ``` @@ -85,12 +86,13 @@ gn:Abbrev -> gn-term:phenotypeOfPublication -> pubmed:pmid Here's an example query: ```sparql -@prefix gn: <http://genenetwork.org/id/> . -@prefix gn-term: <http://genenetwork.org/terms/> . -@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . -@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . -@prefix xsd: <http://www.w3.org/2001/XMLSchema#> . -@prefix pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> . +PREFIX dct: <http://purl.org/dc/terms/> +PREFIX gn: <http://genenetwork.org/id/> +PREFIX gn-term: <http://genenetwork.org/terms/> +PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> +PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> +PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> +PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> SELECT ?s ?p ?o WHERE { ?s rdf:type gn:phenotype . |