two version of R2R are hereHEADmaster

1 files changed, 262 insertions, 0 deletions

diff --git a/.venv/lib/python3.12/site-packages/networkx/readwrite/tests/test_adjlist.py b/.venv/lib/python3.12/site-packages/networkx/readwrite/tests/test_adjlist.py
new file mode 100644
index 00000000..f2218eba
--- /dev/null
+++ b/.venv/lib/python3.12/site-packages/networkx/readwrite/tests/test_adjlist.py
@@ -0,0 +1,262 @@
+"""
+Unit tests for adjlist.
+"""
+
+import io
+
+import pytest
+
+import networkx as nx
+from networkx.utils import edges_equal, graphs_equal, nodes_equal
+
+
+class TestAdjlist:
+    @classmethod
+    def setup_class(cls):
+        cls.G = nx.Graph(name="test")
+        e = [("a", "b"), ("b", "c"), ("c", "d"), ("d", "e"), ("e", "f"), ("a", "f")]
+        cls.G.add_edges_from(e)
+        cls.G.add_node("g")
+        cls.DG = nx.DiGraph(cls.G)
+        cls.XG = nx.MultiGraph()
+        cls.XG.add_weighted_edges_from([(1, 2, 5), (1, 2, 5), (1, 2, 1), (3, 3, 42)])
+        cls.XDG = nx.MultiDiGraph(cls.XG)
+
+    def test_read_multiline_adjlist_1(self):
+        # Unit test for https://networkx.lanl.gov/trac/ticket/252
+        s = b"""# comment line
+1 2
+# comment line
+2
+3
+"""
+        bytesIO = io.BytesIO(s)
+        G = nx.read_multiline_adjlist(bytesIO)
+        adj = {"1": {"3": {}, "2": {}}, "3": {"1": {}}, "2": {"1": {}}}
+        assert graphs_equal(G, nx.Graph(adj))
+
+    def test_unicode(self, tmp_path):
+        G = nx.Graph()
+        name1 = chr(2344) + chr(123) + chr(6543)
+        name2 = chr(5543) + chr(1543) + chr(324)
+        G.add_edge(name1, "Radiohead", **{name2: 3})
+
+        fname = tmp_path / "adjlist.txt"
+        nx.write_multiline_adjlist(G, fname)
+        H = nx.read_multiline_adjlist(fname)
+        assert graphs_equal(G, H)
+
+    def test_latin1_err(self, tmp_path):
+        G = nx.Graph()
+        name1 = chr(2344) + chr(123) + chr(6543)
+        name2 = chr(5543) + chr(1543) + chr(324)
+        G.add_edge(name1, "Radiohead", **{name2: 3})
+        fname = tmp_path / "adjlist.txt"
+        with pytest.raises(UnicodeEncodeError):
+            nx.write_multiline_adjlist(G, fname, encoding="latin-1")
+
+    def test_latin1(self, tmp_path):
+        G = nx.Graph()
+        name1 = "Bj" + chr(246) + "rk"
+        name2 = chr(220) + "ber"
+        G.add_edge(name1, "Radiohead", **{name2: 3})
+        fname = tmp_path / "adjlist.txt"
+        nx.write_multiline_adjlist(G, fname, encoding="latin-1")
+        H = nx.read_multiline_adjlist(fname, encoding="latin-1")
+        assert graphs_equal(G, H)
+
+    def test_parse_adjlist(self):
+        lines = ["1 2 5", "2 3 4", "3 5", "4", "5"]
+        nx.parse_adjlist(lines, nodetype=int)  # smoke test
+        with pytest.raises(TypeError):
+            nx.parse_adjlist(lines, nodetype="int")
+        lines = ["1 2 5", "2 b", "c"]
+        with pytest.raises(TypeError):
+            nx.parse_adjlist(lines, nodetype=int)
+
+    def test_adjlist_graph(self, tmp_path):
+        G = self.G
+        fname = tmp_path / "adjlist.txt"
+        nx.write_adjlist(G, fname)
+        H = nx.read_adjlist(fname)
+        H2 = nx.read_adjlist(fname)
+        assert H is not H2  # they should be different graphs
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+    def test_adjlist_digraph(self, tmp_path):
+        G = self.DG
+        fname = tmp_path / "adjlist.txt"
+        nx.write_adjlist(G, fname)
+        H = nx.read_adjlist(fname, create_using=nx.DiGraph())
+        H2 = nx.read_adjlist(fname, create_using=nx.DiGraph())
+        assert H is not H2  # they should be different graphs
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+    def test_adjlist_integers(self, tmp_path):
+        fname = tmp_path / "adjlist.txt"
+        G = nx.convert_node_labels_to_integers(self.G)
+        nx.write_adjlist(G, fname)
+        H = nx.read_adjlist(fname, nodetype=int)
+        H2 = nx.read_adjlist(fname, nodetype=int)
+        assert H is not H2  # they should be different graphs
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+    def test_adjlist_multigraph(self, tmp_path):
+        G = self.XG
+        fname = tmp_path / "adjlist.txt"
+        nx.write_adjlist(G, fname)
+        H = nx.read_adjlist(fname, nodetype=int, create_using=nx.MultiGraph())
+        H2 = nx.read_adjlist(fname, nodetype=int, create_using=nx.MultiGraph())
+        assert H is not H2  # they should be different graphs
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+    def test_adjlist_multidigraph(self, tmp_path):
+        G = self.XDG
+        fname = tmp_path / "adjlist.txt"
+        nx.write_adjlist(G, fname)
+        H = nx.read_adjlist(fname, nodetype=int, create_using=nx.MultiDiGraph())
+        H2 = nx.read_adjlist(fname, nodetype=int, create_using=nx.MultiDiGraph())
+        assert H is not H2  # they should be different graphs
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+    def test_adjlist_delimiter(self):
+        fh = io.BytesIO()
+        G = nx.path_graph(3)
+        nx.write_adjlist(G, fh, delimiter=":")
+        fh.seek(0)
+        H = nx.read_adjlist(fh, nodetype=int, delimiter=":")
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+
+class TestMultilineAdjlist:
+    @classmethod
+    def setup_class(cls):
+        cls.G = nx.Graph(name="test")
+        e = [("a", "b"), ("b", "c"), ("c", "d"), ("d", "e"), ("e", "f"), ("a", "f")]
+        cls.G.add_edges_from(e)
+        cls.G.add_node("g")
+        cls.DG = nx.DiGraph(cls.G)
+        cls.DG.remove_edge("b", "a")
+        cls.DG.remove_edge("b", "c")
+        cls.XG = nx.MultiGraph()
+        cls.XG.add_weighted_edges_from([(1, 2, 5), (1, 2, 5), (1, 2, 1), (3, 3, 42)])
+        cls.XDG = nx.MultiDiGraph(cls.XG)
+
+    def test_parse_multiline_adjlist(self):
+        lines = [
+            "1 2",
+            "b {'weight':3, 'name': 'Frodo'}",
+            "c {}",
+            "d 1",
+            "e {'weight':6, 'name': 'Saruman'}",
+        ]
+        nx.parse_multiline_adjlist(iter(lines))  # smoke test
+        with pytest.raises(TypeError):
+            nx.parse_multiline_adjlist(iter(lines), nodetype=int)
+        nx.parse_multiline_adjlist(iter(lines), edgetype=str)  # smoke test
+        with pytest.raises(TypeError):
+            nx.parse_multiline_adjlist(iter(lines), nodetype=int)
+        lines = ["1 a"]
+        with pytest.raises(TypeError):
+            nx.parse_multiline_adjlist(iter(lines))
+        lines = ["a 2"]
+        with pytest.raises(TypeError):
+            nx.parse_multiline_adjlist(iter(lines), nodetype=int)
+        lines = ["1 2"]
+        with pytest.raises(TypeError):
+            nx.parse_multiline_adjlist(iter(lines))
+        lines = ["1 2", "2 {}"]
+        with pytest.raises(TypeError):
+            nx.parse_multiline_adjlist(iter(lines))
+
+    def test_multiline_adjlist_graph(self, tmp_path):
+        G = self.G
+        fname = tmp_path / "adjlist.txt"
+        nx.write_multiline_adjlist(G, fname)
+        H = nx.read_multiline_adjlist(fname)
+        H2 = nx.read_multiline_adjlist(fname)
+        assert H is not H2  # they should be different graphs
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+    def test_multiline_adjlist_digraph(self, tmp_path):
+        G = self.DG
+        fname = tmp_path / "adjlist.txt"
+        nx.write_multiline_adjlist(G, fname)
+        H = nx.read_multiline_adjlist(fname, create_using=nx.DiGraph())
+        H2 = nx.read_multiline_adjlist(fname, create_using=nx.DiGraph())
+        assert H is not H2  # they should be different graphs
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+    def test_multiline_adjlist_integers(self, tmp_path):
+        fname = tmp_path / "adjlist.txt"
+        G = nx.convert_node_labels_to_integers(self.G)
+        nx.write_multiline_adjlist(G, fname)
+        H = nx.read_multiline_adjlist(fname, nodetype=int)
+        H2 = nx.read_multiline_adjlist(fname, nodetype=int)
+        assert H is not H2  # they should be different graphs
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+    def test_multiline_adjlist_multigraph(self, tmp_path):
+        G = self.XG
+        fname = tmp_path / "adjlist.txt"
+        nx.write_multiline_adjlist(G, fname)
+        H = nx.read_multiline_adjlist(fname, nodetype=int, create_using=nx.MultiGraph())
+        H2 = nx.read_multiline_adjlist(
+            fname, nodetype=int, create_using=nx.MultiGraph()
+        )
+        assert H is not H2  # they should be different graphs
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+    def test_multiline_adjlist_multidigraph(self, tmp_path):
+        G = self.XDG
+        fname = tmp_path / "adjlist.txt"
+        nx.write_multiline_adjlist(G, fname)
+        H = nx.read_multiline_adjlist(
+            fname, nodetype=int, create_using=nx.MultiDiGraph()
+        )
+        H2 = nx.read_multiline_adjlist(
+            fname, nodetype=int, create_using=nx.MultiDiGraph()
+        )
+        assert H is not H2  # they should be different graphs
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+    def test_multiline_adjlist_delimiter(self):
+        fh = io.BytesIO()
+        G = nx.path_graph(3)
+        nx.write_multiline_adjlist(G, fh, delimiter=":")
+        fh.seek(0)
+        H = nx.read_multiline_adjlist(fh, nodetype=int, delimiter=":")
+        assert nodes_equal(list(H), list(G))
+        assert edges_equal(list(H.edges()), list(G.edges()))
+
+
+@pytest.mark.parametrize(
+    ("lines", "delim"),
+    (
+        (["1 2 5", "2 3 4", "3 5", "4", "5"], None),  # No extra whitespace
+        (["1\t2\t5", "2\t3\t4", "3\t5", "4", "5"], "\t"),  # tab-delimited
+        (
+            ["1\t2\t5", "2\t3\t4", "3\t5\t", "4\t", "5"],
+            "\t",
+        ),  # tab-delimited, extra delims
+        (
+            ["1\t2\t5", "2\t3\t4", "3\t5\t\t\n", "4\t", "5"],
+            "\t",
+        ),  # extra delim+newlines
+    ),
+)
+def test_adjlist_rstrip_parsing(lines, delim):
+    """Regression test related to gh-7465"""
+    expected = nx.Graph([(1, 2), (1, 5), (2, 3), (2, 4), (3, 5)])
+    nx.utils.graphs_equal(nx.parse_adjlist(lines, delimiter=delim), expected)