genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2024-09-12	Fix failing tests after merging in Pjotr's pull request.	Frederick Muriuki Muriithi

2022-02-24	gn3: Explicitly specify UTF-8 to be the file encoding.	Arun Isaac
	When the encoding is not specified explicitly, the system default encoding is used. This is not recommended. * gn3/computations/ctl.py (call_ctl_script), gn3/computations/gemma.py (generate_pheno_txt_file), gn3/computations/parsers.py (parse_genofile), gn3/computations/partial_correlations.py (partial_correlations_fast), gn3/computations/rqtl.py (process_rqtl_output, process_perm_output), gn3/computations/wgcna.py (dump_wgcna_data, call_wgcna_script), gn3/fs_helpers.py (jsonfile_to_dict): Explicitly specify UTF-8 to be the file encoding. * tests/unit/computations/test_gemma.py (TestGemma.test_generate_pheno_txt_file), tests/unit/computations/test_wgcna.py (TestWgcna.test_create_json_file): Test for call to open with encoding='utf-8' argument.
2022-02-17	Use pytest's "mark" feature to categorise tests	Frederick Muriuki Muriithi
	Use pytest's `mark` feature to explicitly categorise the tests and run them per category
2021-05-08	Fix typo	BonfaceKilz

2021-03-10	Fix k-compute command when "loco" is true	BonfaceKilz

2021-03-08	Delete "generate_gemma_computation_cmd"	BonfaceKilz

2021-03-08	Replace "compute_k_values" with "generate_gemma_cmd"	BonfaceKilz

2021-03-08	Add generic fn for computing k and gwa values	BonfaceKilz

2021-03-08	Apply pep-8 formatting	BonfaceKilz
	Began using elpy's format code fn
2021-03-08	Fix failing tests	BonfaceKilz

2021-02-24	Create a new helper function for generating k_values and GWA	BonfaceKilz

2021-02-24	Add new procedure that computes the hash of an array of strings	BonfaceKilz

2021-02-24	Create a new method for generating a valid phenotype file on the fly	BonfaceKilz