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2024-11-11refactor: refactor printing out lod thresholds.Alexander_Kabui
2024-11-11export qtl effect plots for multi parent populations.Alexander_Kabui
2024-11-11feat: add plots for qtl effect multi parent population.Alexander_Kabui
2024-11-11feat: implementation for getting meffects for multiparent population.Alexander_Kabui
2024-11-11feat: implementation for multiparent genome scan.Alexander_Kabui
2024-11-11feat: export chromosome names and qtl effects.Alexander_Kabui
2024-11-08feat: init add functionality to estimate qtl effect.Alexander_Kabui
2024-10-30feat: add option for using pstrata for permutation.Alexander_Kabui
2024-10-30Refactor: Remove reduntant code.Alexander_Kabui
2024-10-29Refactor: pre compute kinship for both permutation and genome scan.Alexander_Kabui
2024-10-29Refactor: remove hardcoded dir_path for control files.Alexander_Kabui
2024-10-29Refactor: make plot in the temp directory passed in the script arguments.Alexander_Kabui
2024-10-29feat: add output_file as a command line argument.Alexander_Kabui
2024-10-29Refactor: ensure the temp directory is not null.Alexander_Kabui
2024-10-29feat: add optparse for the arguments.Alexander_Kabui
2024-10-29feat: write output results as json.Alexander_Kabui
2024-10-29Refactor: refactor code to find lod peaks.Alexander_Kabui
2024-10-29Refactor: refactoring for code to perform permutation tests.Alexander_Kabui
2024-10-29Refactor: refactor function to generate plots from scan1 function.Alexander_Kabui
2024-10-29Refactor: refactor method to compute scan 1.Alexander_Kabui
2024-10-29Refactor: refactor function to calculate error LOD scores.Alexander_Kabui
2024-10-29Refactor: refactor functions to compute genetic probabilities:Alexander_Kabui
2024-10-29Refactor: cleanup comments.Alexander_Kabui
2024-10-29Refactor: use FALSE for better defaults.Alexander_Kabui
2024-10-29feat: add defaults for creating cross objects.Alexander_Kabui
2024-10-28refactor: Minor fixes for file, remove commentsAlexander_Kabui
2024-10-25feat: add function to fetch load peaks for 1 QTL.Alexander_Kabui
2024-10-25Minor fix.Alexander_Kabui
2024-10-25Refactor: apply code formatting.Alexander_Kabui
2024-10-25feat: add code to perform permutation for single Qtl.Alexander_Kabui
2024-10-25feat: add method to generate LOD curves for the genome scan.Alexander_Kabui
2024-10-25feat: Add method to perform 1 pair scan.Alexander_Kabui
2024-10-25feat: add code to perform genetic probabilities.Alexander_Kabui
2024-10-24feat: create implementation for creating cross object using r-qtl2.Alexander_Kabui
2024-09-27Fix Pair-Scan output pathsFrederick Muriuki Muriithi
2024-09-27Fix R/qtl output pathszsloan
2024-09-12Make sure dir exists before running R/qtlPjotr Prins
2024-09-12Getting Rqtl to run on fallbackPjotr Prins
2024-07-23chore: add logging infoJohn Nduli
2024-07-23chore: mypy and pylint fixesJohn Nduli
2024-07-23fix: resolve duplicate errors when updating dataJohn Nduli
2024-07-23refactor: clean query for insertJohn Nduli
2024-07-23refactor: clean up insert queryJohn Nduli
2024-07-23refactor: reorganize update_rif script to be more pythonicJohn Nduli
2024-07-23chore: fix pylint errorsJohn Nduli
2024-07-23refactor: rename addRIf to update_rif_table.pyJohn Nduli
2024-07-12Rename hash_rdf_graph -> md5hash_ttl_dir.Munyoki Kilyungi
2024-07-12Use correct ttl-dir path when generating checksums.Munyoki Kilyungi
2024-07-12fix: remove .py extension for addRif to prevent pylint checksJohn Nduli
2024-07-12refactor: fix mypy and pylint errorsJohn Nduli
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