aboutsummaryrefslogtreecommitdiff
path: root/gn3/db
AgeCommit message (Expand)Author
2024-09-11Update RDF queries to match ADR/000/gn-transform-databases.Munyoki Kilyungi
2024-09-05Update comment explaining why CONSTRUCT doesn't respect ORDER BY.Munyoki Kilyungi
2024-09-05Correctly get categories in response.Munyoki Kilyungi
2024-09-05Sort the RIF history data in reverse order.Munyoki Kilyungi
2024-09-05Enforce array type to "categories" and "pmids" fields.Munyoki Kilyungi
2024-09-05Set OPTIONAL values to default to an empty string.Munyoki Kilyungi
2024-09-05Rename "pubmed_id" -> "pubmed_ids" to be explicit it's an array.Munyoki Kilyungi
2024-09-05Remove type from wiki history.Munyoki Kilyungi
2024-09-05Fix type error.Munyoki Kilyungi
2024-09-05Add comment history.Munyoki Kilyungi
2024-09-05Always output the top-level graph when compacting.Munyoki Kilyungi
2024-09-05Use correct prefix when querying for email in triple.Munyoki Kilyungi
2024-09-05Create global wiki context usable by all functions in gn3.rdf.wikiMunyoki Kilyungi
2024-09-05Add missing doc-strings to make pylint pass.Munyoki Kilyungi
2024-09-05Restructure RDF module.Munyoki Kilyungi
2024-08-29chore: pylint docstringJohn Nduli
2024-08-29feat: add api calls to get categories and last commentJohn Nduli
2024-08-29Remove "@id" re-map in the json-ld base context.Munyoki Kilyungi
2024-08-29Fetch the latest comment by the versionId.Munyoki Kilyungi
2024-08-29Make fetching wiki entries by symbol case insensitive.Munyoki Kilyungi
2024-08-29Add "created" to wiki return.Munyoki Kilyungi
2024-08-26Fix pylint errors.Munyoki Kilyungi
2024-08-26If there's no data, return a 404.Munyoki Kilyungi
2024-08-26Replace map with list comprehension.Munyoki Kilyungi
2024-08-26Fetch all the wiki entries by symbol.Munyoki Kilyungi
2024-08-26Move constants to their own file.Munyoki Kilyungi
2024-08-26chore: fix pylint errorsJohn Nduli
2024-08-26refactor: split out utlities into their modules and change api to use metadataJohn Nduli
2024-04-30Add an endpoint to query a dataset's git history from it's id.Munyoki Kilyungi
2024-04-30Add a method for saving a dataset's metadata to git.Munyoki Kilyungi
2024-04-30Rename retrieve_dataset_metadata to retrieve_metadata.Munyoki Kilyungi
2024-04-30Remove an f-string that doesn't have any interpolated variables.Munyoki Kilyungi
2024-04-29Prevent error when group isn't in parents/f1s JSON filezsloan
2024-04-11Include parents/f1s in default samplelist + add boolean options for themzsloan
2024-02-25Construct genofile_path using pathlib module.Munyoki Kilyungi
2024-02-15Use correct names for dataset entries in json result.Munyoki Kilyungi
2024-02-13Fetch extra metadata from text-files when fetching datasets.Munyoki Kilyungi
2024-02-13Retrieve metadata from text files given a path.Munyoki Kilyungi
2023-10-27Fix pylint error.Munyoki Kilyungi
2023-10-27Add functions that wrap around the common jsonld patterns.Munyoki Kilyungi
2023-10-27Break up long line.Munyoki Kilyungi
2023-10-27Ignore construct result for mypy complianceMunyoki Kilyungi
2023-10-27Abstract out (sparql) CONSTRUCT into a function.Munyoki Kilyungi
2023-10-27Delete gn3.db.rdf.sparql_query.Munyoki Kilyungi
2023-10-27Delete db.rdf.get_url_local_name.Munyoki Kilyungi
2023-10-27Implement "GET /metadata/phenotypes/:name".Munyoki Kilyungi
2023-10-27Delete get_dataset_metadata.Munyoki Kilyungi
2023-10-27Implement "GET /metadata/publications/:name".Munyoki Kilyungi
2023-10-27Add fabio: and prism: to PREFIXES.Munyoki Kilyungi
2023-10-27Implement "GET /metadata/datasets/:name".Munyoki Kilyungi