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path: root/gn3/case_attributes.py
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2024-11-15Fix bug where case attribute editing didn't work if a case attribute waszsloan
called 'Strain' This is because the code was also using 'Strain' for the strain name. At least for the time being, I addressed this by changing those instances to 'Sample' instead (which I don't believe is ever a case attribute name).
2024-11-14Fix auth endpoint for case attribute editingzsloan
2024-11-14Fix case attribute queryzsloan
2024-10-18refactor: move definition of auth errs and remove auth cli utilsJohn Nduli
2024-08-01Update case-attribute editing to use new authorisation.Frederick Muriuki Muriithi
2023-10-26Fix errors caught by mypy.Frederick Muriuki Muriithi
2023-10-26case-attribute: Fix linting errors.Frederick Muriuki Muriithi
2023-10-25case-attribute: Implement __apply_diff__Frederick Muriuki Muriithi
Enable the "apply diff" feature which actually makes changes to the database by applying the given diff.
2023-10-25case-attribute: Bug: List ALL case-attribute valuesFrederick Muriuki Muriithi
Fix bug where only one case-attribute value was returned.
2023-10-24case-attribute: use isoformat() for datetime objects.Frederick Muriuki Muriithi
2023-10-23case-attribute: View case attribute diffFrederick Muriuki Muriithi
2023-10-19CaseAttribute: change URL, Create diff dir, fix diffFrederick Muriuki Muriithi
* Change the URL for listing an inbredset group's case-attribute diffs * Create the diff directory if it does not exist * Add `filename` to the output sent to the browser
2023-10-12CaseAttributes: List diffs under reviewFrederick Muriuki Muriithi
List diffs under review for a given InbredSet. Regenerate any diff files that might be deleted while still under review.
2023-10-12CaseAttribute: Bug: Fix bugs with rejecting diffs.Frederick Muriuki Muriithi
2023-10-12CaseAttributes: Bug: Fix privileges checkFrederick Muriuki Muriithi
2023-10-12CaseAttribute: Bug: Fix query - include time_stamp.Frederick Muriuki Muriithi
2023-10-12CaseAttribute: Encode/Decode to/from JSON appropriately.Frederick Muriuki Muriithi
2023-10-12Remove unnecessary clutter.Frederick Muriuki Muriithi
2023-10-12CaseAttribute: Bug: enumerate the privileges correctly.Frederick Muriuki Muriithi
2023-10-11CaseAttribute: Reject a diff (delete file).Frederick Muriuki Muriithi
2023-10-11CaseAttribute: Load diff from file.Frederick Muriuki Muriithi
2023-10-11CaseAttribute: Save diff to db at queue time.Frederick Muriuki Muriithi
2023-10-11CaseAttribute: Save the diff to the database.Frederick Muriuki Muriithi
2023-10-10Do authorisation checks for relevant functionsFrederick Muriuki Muriithi
Add a `required_access(...)` function to be used to check that the user has the appropriate privileges to act on the case attributes.
2023-10-10Update importsFrederick Muriuki Muriithi
Update imports after removing the authentication from GN3
2023-10-10Implement some queuing logic for diffsFrederick Muriuki Muriithi
Queue the diffs into files - this might change somewhat once we verify whether case-attribute editing needs an approval step.
2023-10-10Check whether there's changes before queuing the diff.Frederick Muriuki Muriithi
2023-10-10Process Edit data. Fix bugs and typos.Frederick Muriuki Muriithi
Process the edit data into a CSV form for diff generation. Fix bug in: * processing of original data into a CSV * variable passed to DictWriter * arguments to functions
2023-10-10Retrieve InbredSet Group's samples/strainsFrederick Muriuki Muriithi
Retrieve the samples/strains that relate to a particular InbredSet group.
2023-10-10Retrieve InbredSet group details.Frederick Muriuki Muriithi
2023-10-10Clean-up original data, and case-attribute namesFrederick Muriuki Muriithi
For diff-generation purposes, this commit processes the data into a form that is useful for generation of the CSV files to be used for the diffs.
2023-10-10Implement computing of diffsFrederick Muriuki Muriithi
2023-10-10Extract fetching of case-attribute namesFrederick Muriuki Muriithi
Extract the fetching of case-attribute names into a separate function that can be used elsewhere.
2023-10-10Rename function: Make it clearer what function does.Frederick Muriuki Muriithi
2023-10-10Bug: Fix missing cursor object.Frederick Muriuki Muriithi
2023-10-10Add scaffolding for add/delete endpoints.Frederick Muriuki Muriithi
2023-10-10Add scaffolding for case-attribute editing logic.Frederick Muriuki Muriithi
2023-10-10Extract fetching of case-attributes by InbredSetIdFrederick Muriuki Muriithi
2023-10-10Editing: Retrieve case-attribute values for an InbredSet group.Frederick Muriuki Muriithi
2023-10-10Editing: Retrieve case attributes by the related InbredSetFrederick Muriuki Muriithi
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-11-22 14:53:37 +0000