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authorFrederick Muriuki Muriithi2023-08-30 09:20:16 +0300
committerFrederick Muriuki Muriithi2023-10-10 11:12:49 +0300
commit567e6f00efbf700adf82d6118be445b66b5e212d (patch)
tree4b62cd88d68a77038249d8ca1acb4f0e76e97f13 /gn3/case_attributes.py
parenta30a221187ba0218aa24aff6fe15730d0859cfe2 (diff)
downloadgenenetwork3-567e6f00efbf700adf82d6118be445b66b5e212d.tar.gz
Check whether there's changes before queuing the diff.
Diffstat (limited to 'gn3/case_attributes.py')
-rw-r--r--gn3/case_attributes.py42
1 files changed, 30 insertions, 12 deletions
diff --git a/gn3/case_attributes.py b/gn3/case_attributes.py
index 04472c9..3e22764 100644
--- a/gn3/case_attributes.py
+++ b/gn3/case_attributes.py
@@ -19,6 +19,13 @@ from gn3.auth.authorisation.errors import AuthorisationError
caseattr = Blueprint("case-attribute", __name__)
+class NoDiffError(ValueError):
+ """Raised if there is no difference between the old and new data."""
+ def __init__(self):
+ """Initialise exception."""
+ super().__init__(
+ self, "No difference between existing data and sent data.")
+
def __inbredset_group__(conn, inbredset_id):
"""Return InbredSet group's top-level details."""
with conn.cursor(cursorclass=DictCursor) as cursor:
@@ -172,8 +179,10 @@ def __queue_diff__(conn: Connection, user: User, diff) -> str:
On success, this will return the filename where the diff was saved.
On failure, it will raise a MySQL error.
"""
- # TODO: Check user has "edit case attribute privileges"
- raise NotImplementedError
+ if bool(diff["Additions"]) or bool(diff["Modifications"]) or bool(diff["Deletions"]):
+ # TODO: Check user has "edit case attribute privileges"
+ raise NotImplementedError
+ raise NoDiffError
def __apply_diff__(conn: Connection, user: User, diff_filename) -> None:
"""
@@ -217,23 +226,32 @@ def edit_case_attributes(inbredset_id: int) -> Response:
database_connection(current_app.config["SQL_URI"]) as conn):
# TODO: Check user has "edit case attribute privileges"
user = the_token.user
- fieldnames = (["Strain"] + sorted(
- attr["Name"] for attr in
- __case_attribute_labels_by_inbred_set__(conn, inbredset_id)))
- diff_filename = __queue_diff__(conn, user, __compute_diff__(
- fieldnames,
- __process_orig_data__(
- fieldnames,
- __case_attribute_values_by_inbred_set__(conn, inbredset_id),
- __inbredset_strains__(conn, inbredset_id)),
- __process_edit_data__(fieldnames, request.json["edit-data"])))
try:
+ fieldnames = (["Strain"] + sorted(
+ attr["Name"] for attr in
+ __case_attribute_labels_by_inbred_set__(conn, inbredset_id)))
+ diff_filename = __queue_diff__(conn, user, __compute_diff__(
+ fieldnames,
+ __process_orig_data__(
+ fieldnames,
+ __case_attribute_values_by_inbred_set__(conn, inbredset_id),
+ __inbredset_strains__(conn, inbredset_id)),
+ __process_edit_data__(fieldnames, request.json["edit-data"])))
+
__apply_diff__(conn, user, diff_filename)
return jsonify({
"diff-status": "applied",
"message": ("The changes to the case-attributes have been "
"applied successfully.")
})
+ except NoDiffError as _nde:
+ msg = "There were no changes to make from submitted data."
+ response = jsonify({
+ "diff-status": "error",
+ "error_description": msg
+ })
+ response.status_code = 400
+ return response
except AuthorisationError as _auth_err:
return jsonify({
"diff-status": "queued",