genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2023-10-10	Remove authentication from GN3	Frederick Muriuki Muriithi
	Authentication should be handled by the auth server (gn-auth) and thus, this commit removes code handling user authentication from the GN3 system.
2023-07-03	Spruce up UI	Frederick Muriuki Muriithi
	Make UI somewhat consistent with the GN2 UI.
2023-07-03	Enable deletion of OAuth2 clients.	Frederick Muriuki Muriithi

2023-06-30	Edit some of the details of OAuth2 clients	Frederick Muriuki Muriithi

2023-06-30	List all OAuth2 clients.	Frederick Muriuki Muriithi

2023-06-23	Fetch all collections, rename variables	Frederick Muriuki Muriithi
	Fetch from `__REDIS_COLLECTION_KEY__` not `"collections"` to ensure all collections are retrieved correctly. Rename from `___DOC__` to `__REDIS__KEY__` to more clearly express what the variables are about.
2023-06-20	Fix conflicts	zsloan

2023-06-20	Bug: Don't overwrite/delete old collections	Frederick Muriuki Muriithi

2023-06-13	Namespace session variable	Frederick Muriuki Muriithi
	Extract the functions acting on the session into a separate module and namespace the session variable to prevent conflicts.
2023-06-08	Fix bugs with accessing/creating collections	zsloan

2023-05-29	auth: Enable registration of OAuth2 clients	Frederick Muriuki Muriithi
	Add UI and code to enable the administrative user to register new OAuth2 clients that can access the API server.
2023-05-29	Enable Administrator login on GN3	Frederick Muriuki Muriithi
	* gn3/auth/authentication/oauth2/views.py: Remove endpoint * gn3/auth/authorisation/users/admin/__init__.py: New admin module * gn3/auth/authorisation/users/admin/ui.py: New admin module * gn3/auth/authorisation/users/admin/views.py: New admin module * gn3/auth/views.py: Use new admin module * gn3/errors.py: Fix linting errors * gn3/templates/login.html: New html template * main.py: Fix linting errors
2023-05-23	auth: Enable user masquerade	Frederick Muriuki Muriithi
	Enable users with the appropriate privileges to masquerade as other users by providing an endpoint that provides a new token for the "masqueradee"
2023-05-18	auth: Rename collections	Frederick Muriuki Muriithi
	Enable renaming collections.
2023-05-18	auth: user collections: Add and/or remove traits.	Frederick Muriuki Muriithi

2023-05-17	auth: Delete collections by ID.	Frederick Muriuki Muriithi

2023-05-17	auth: Import/Delete Anonymous Collections	Frederick Muriuki Muriithi
	Add code to enable the importation/deletion of anonymous collections in the active session to the authenticated user's collections.
2023-05-16	auth: View a collection by its ID.	Frederick Muriuki Muriithi

2023-05-15	collections: Move code to new package. Create new collections.	Frederick Muriuki Muriithi
	Move the code to a new package. Enable the creation of new collection by both authenticated and anonymous users.
2023-05-12	auth: Provide separate endpoint for anonymous collections.	Frederick Muriuki Muriithi

2023-05-11	auth: Fix bug with migration of user collections	Frederick Muriuki Muriithi
	The code, as written previously had a subtle bug - if the user created a new collection before they had tried accessing their list of collections, the older code would not have migrated the older collections. This commit fixes that by enabling the migration of older collections, whether or not the user has created a collection with their new accounts.
2023-05-10	auth: Add the /oauth2/user/collections/list endpoint	Frederick Muriuki Muriithi
	Add an endpoint to list a user's collections. This only works for logged in users.
2023-04-27	oauth2: Provide missing `user_editable` argument.	Frederick Muriuki Muriithi

2023-04-24	auth: Return the actual privileges for the user	Frederick Muriuki Muriithi
	Previously, the `oauth2/data/authorisation` endpoint was returning hard-coded values for the privileges assigned to the user for each resource. In this change, we rework to return the actual privileges for the user.
2023-03-09	auth: redis data: migrate data in redis	Frederick Muriuki Muriithi
	Implement the code to migrate the data from redis to SQLite.
2023-03-09	auth: data migration: Data migration outline	Frederick Muriuki Muriithi
	Provide an outline of the data migration steps to be taken from some results of the experiments with the data in redis.
2023-03-06	auth: resources: Enable assigning a user roles on resources	Frederick Muriuki Muriithi

2023-03-02	auth: user registration: Rework error checking. Add email validation	Frederick Muriuki Muriithi

2023-02-10	Return empty tuple rather than Nothing	Frederick Muriuki Muriithi
	When user has no roles assigned, return an empty tuple rather than pymonad.maybe.Nothing to ease maintenance.
2023-02-09	auth: users: Check whether a user has an active join request.	Frederick Muriuki Muriithi

2023-02-02	auth: Reorganise modules/packages for easier dev and maintenance	Frederick Muriuki Muriithi
	Split the views/routes into separate modules each dealing with a narrower scope of the application to aid in maintenance, and help with making the development easier.