| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-10-27 | Improve logging for the asynchronous background tasks. | Frederick Muriuki Muriithi | |
| 2025-10-27 | Pass `TEXTDIR` configuration on to the script. | Frederick Muriuki Muriithi | |
| Pass the `TEXXDIR` configuration variable on to the script. | |||
| 2025-10-27 | Enable logging in `gn3.db.menu` module. | Frederick Muriuki Muriithi | |
| 2025-10-22 | typing: Fix type errors. | Frederick Muriuki Muriithi | |
| 2025-10-22 | Fetch configs from app setting and pass them down | Frederick Muriuki Muriithi | |
| Fix the code to avoid using global variables holding configuration variables to avoid the failures caused by action-at-a-distance effects due to change of a value elsewhere. This way, all code consistently receives the same configuration values passed on from callers. We pass on the following configuration settings: * TMPDIR * SQL_URI * TEXTDIR | |||
| 2025-10-15 | Configurations: Use non-executable file for settings. | Frederick Muriuki Muriithi | |
| Move configuration from executable .py file into a non-executable .json file. See https://issues.genenetwork.org/issues/genenetwork3/genenetwork3_configuration | |||
| 2025-09-10 | Fix pylint failing tests. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-08-13 | Initialise logging formats. | Frederick Muriuki Muriithi | |
| 2025-08-13 | Improve logging by setting up handlers appropriately for each env. | Frederick Muriuki Muriithi | |
| 2025-08-12 | Typo: Fix variable names. | Frederick Muriuki Muriithi | |
| 2025-08-12 | Setup module-specific loggers. | Frederick Muriuki Muriithi | |
| 2025-08-06 | Use default `quotechar=None`. | Frederick Muriuki Muriithi | |
| 2025-07-16 | refactor: pass request headers as dict. | Alexander_Kabui | |
| 2025-07-16 | refactor: pass required fields directly instead of request object for rate ↵ | Alexander_Kabui | |
| limiting. | |||
| 2025-07-16 | feat: Minor fix. | Alexander_Kabui | |
| 2025-07-16 | feat: Implement gnqna rate limiter. | Alexander_Kabui | |
| 2025-07-09 | Re-apply "Chores/gnqa no login" | BonfaceKilz | |
| This reverts commit f5e89525f941caa6546ea777bb632b7aa44f9b1f. | |||
| 2025-07-09 | Revert "Chores/gnqa no login" (#229) | BonfaceKilz | |
| 2025-07-07 | Ignore pylint rule. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Delete unused import. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Remove default LMDB_DATA_PATH. | Munyoki Kilyungi | |
| This should be explicitly set. | |||
| 2025-07-07 | Add null check for cursor.fetchone() in apply_change function. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Only queue an edit during edits. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Fix minor bug in how reviews and approvals are added to LMDB. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Update endpoint for listing diffs to include the change_type. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Rename dict key. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Delete view_diff end-point. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Update list_diffs to filter by change_type, remove auth check. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Feed json object directly into CaseAttributeEdit when editing. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Fix mypy. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Refactor get_changes to filter by EditStatus; update return dict. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Fix minor spacing issue. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Fix empty change_ids in fetch_case_attrs_changes to return {}. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Fix mypy errors. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Fix pylint errors. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Use app config for LMDB path in case attributes API. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Add missing keyword arg when applying changes. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Fix value access in data dict for case attribute updates. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Add missing doc-strings for functions. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Delete unused imports. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Delete "update_case_attribute" | Munyoki Kilyungi | |
| To update an attribute, you can use the "apply_change" function instead. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Use "401 Authorized" status code for auth errors. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Add authorisation to view-diff endpoint. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Add authorisation for listing diffs. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Use new functions for edit and approve/reject APIs. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Add function for adding a change. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Add function for viewing a single diff change. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Return true at the end of for loop when updating case attributes. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Add function for fetching case attribute changes. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-07-07 | Delete unused case-attributes functions and variables. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
| about summary refs log tree commit diff |