genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2023-10-10	Remove authentication from GN3	Frederick Muriuki Muriithi
	Authentication should be handled by the auth server (gn-auth) and thus, this commit removes code handling user authentication from the GN3 system.
2023-09-05	Fix C3001: Lambda expression assigned to a variable	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-03-07	auth: user_by_id: Return a user or raise an exception	Frederick Muriuki Muriithi
	Fetching the user by id should return the user, or raise an exception. We get rid of the Maybe monad here since it is leading to some weird code flows - probably the wrong monad to use here.
2023-01-31	auth: Set the token scope as a string, not a list	Frederick Muriuki Muriithi
	Setting the scope as a list of strings was leading to errors when attempting to logout. This commit leaves the scope as a string to avoid the errors.
2023-01-21	auth: Fix saving of scope values. Add scope items.	Frederick Muriuki Muriithi

2023-01-20	auth: Save token with update	Frederick Muriuki Muriithi
	If the token already exists, then update the details rather than trying to insert.
2023-01-20	auth: Setup the user correctly	Frederick Muriuki Muriithi
	* gn3/auth/authentication/oauth2/grants/password_grant.py: Return user rather than boolean * gn3/auth/authentication/oauth2/models/oauth2client.py: provide optional `user` argument to allow flexibility in setting up the client's user * gn3/auth/authentication/oauth2/models/oauth2token.py: Set token and client user correctly * gn3/auth/authentication/oauth2/server.py: Set token user from the request
2022-12-22	auth: implement OAuth2 flow.oauth2_auth_flow	Frederick Muriuki Muriithi
	Add code to implement the OAuth2 flow. * Add test fixtures for setting up users and OAuth2 clients * Add tests for token generation with the "Password Grant" flow * Fix some issues with test due to changes in the database connection's row_factory