| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-09-12 | Make sure dir exists before running R/qtl | Pjotr Prins | |
| 2024-09-12 | Replace TMPDIR/output with TMPDIR/gn3 so it is clear where it comes from | Pjotr Prins | |
| 2024-09-12 | rqtl_wrapper: minor fixes | Pjotr Prins | |
| 2024-09-12 | Make sure TMPDIR directories exist! | Pjotr Prins | |
| 2024-09-12 | Move assert_paths_exist into fs_helpers | Pjotr Prins | |
| 2024-09-12 | Change behavior of do_paths_exist to actually throw useful error | Pjotr Prins | |
| 2024-09-12 | Getting Rqtl to run on fallback | Pjotr Prins | |
| 2024-09-12 | Move assert_paths_exist into fs_helpers | Pjotr Prins | |
| 2024-09-12 | Change behavior of do_paths_exist to actually throw useful error | Pjotr Prins | |
| 2024-09-12 | Make the gnqa search endpoint a get request. | Alexander_Kabui | |
| 2024-09-11 | Replace format-string with f-strings. | Munyoki Kilyungi | |
| * gn3/api/llm.py (delete_records): Using format-strings causes pylint to error out. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-11 | Run python-black against file. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-06 | Modify endpoint to use query string. | Alexander_Kabui | |
| 2024-09-06 | Merge pull request #188 from genenetwork/chores/merge-gnqa-api | Alexander Kabui | |
| Chores/merge gnqa api | |||
| 2024-09-05 | Fix type error. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py: Remove FIXME comment. * gn3/db/wiki.py: Fix type error. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Use the correct header to request json-ld data. | Munyoki Kilyungi | |
| In HTTP, we use content negotiation to server different representations of a resource to the same URI to help the user agent specify which representation is best suited for the user: <https://developer.mozilla.org/en-US/docs/Web/HTTP/Content_negotiation> The "Accept" requet HTTP indicates which content types the user is supposed to understand: <https://developer.mozilla.org/en-US/docs/Web/HTTP/Headers/Accept> * gn3/api/metadata_api/wiki.py (get_wiki_entries): Use the "Accept" header. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Add comment history. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py: Import get_comment_history. (get_history): New end-point. * gn3/db/rdf/wiki.py: (get_comment_history): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Ignore type error and add a FIXME stub. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Restructure RDF module. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Import constants from gn3.db.rdf * gn3/api/metadata_api/wiki.py: Ditto. Import "get_wiki_entries_by_symbol" from gn3.db.rdf.wiki. * gn3/db/constants.py: Delete file and move all constants ... * gn3/db/rdf.py: ... and functions ... * gn3/db/rdf/__init__.py: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Sort previos records by datetime. | Alexander_Kabui | |
| 2024-09-05 | Apply pep8 formatting. | Alexander_Kabui | |
| 2024-09-05 | Create new endpoints for fetching user previous records. | Alexander_Kabui | |
| 2024-09-03 | Remove unused imports. | Alexander_Kabui | |
| 2024-09-03 | Use Jsonb for storing results. | Alexander_Kabui | |
| 2024-09-02 | Fix spacing after punctuation. | Alexander_Kabui | |
| 2024-09-02 | Use default datetime for table. | Alexander_Kabui | |
| 2024-09-02 | Add spacing after punctuation. | Alexander_Kabui | |
| 2024-08-30 | Fix merge conflict. | Alexander_Kabui | |
| 2024-08-29 | docs: add function comments | John Nduli | |
| 2024-08-29 | feat: add api calls to get categories and last comment | John Nduli | |
| 2024-08-29 | Add default timestamp and and primary key for Rating table. | Alexander_Kabui | |
| 2024-08-29 | Fix minor typo. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Check for empty values when fetching search history. | Alexander_Kabui | |
| 2024-08-29 | Use correct http method `Delete` for search history. | Alexander_Kabui | |
| 2024-08-29 | Update gnqa search endpoint from POST to PUT. | Alexander_Kabui | |
| 2024-08-26 | Fix mypy errors. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Move "GET /wiki/<symbol>" end-point to gn3.api.metadata.wiki. | Munyoki Kilyungi | |
| * gn3/api/metadata.py (get_wiki_entries): Move this... * gn3/api/metadata_api/wiki.py (edit_wiki): ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Auto-pep8 buffer and ignore type check for payload. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py (edit_wiki): Ignore type-check for payload. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Fix pylint errors. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Remove duplicate imports. * gn3/db/constants.py: Add docstring. * gn3/db/rdf.py (get_wiki_entries_by_symbol): Remove duplicate dictionary key. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | If there's no data, return a 404. | Munyoki Kilyungi | |
| * gn3/api/metadata.py (get_wiki_entries): Return an empty {} when there's no data. * gn3/db/rdf.py (query_frame_and_compact): Delete check for empty results. Instead just return the context as is. (query_and_compact): Ditto. (query_and_frame): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Set correct content-header & status code for ld+json/json response. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Import jsonify, make_response. (get_wiki_entries): Set a 404 status code when a response is empty. Set correct Content-Type header for ld+json. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Fetch all the wiki entries by symbol. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Import "get_wiki_entries_by_symbol". (get_gn_genewiki_entries): Rename this to... (get_wiki_entries): this; and update the URL endpoint. * gn3/db/rdf.py: Import constants.BASE_CONTEXT. (get_wiki_entries_by_symbol): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Move constants to their own file. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Move constants from here... * gn3/db/rdf.py: ... and here, to... * gn3/db/constants.py: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Run autopep8 against file. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | chore: fix pylint errors | John Nduli | |
| 2024-08-26 | refactor: split out utlities into their modules and change api to use metadata | John Nduli | |
| 2024-08-26 | refactor: clean up wiki edit implementation | John Nduli | |
| * Add better error messages * Create more modular functions | |||
| 2024-08-26 | feat: add support for categories in edit query and clearer errors | John Nduli | |
| 2024-08-26 | feat: support for edit wiki entry | John Nduli | |
| 2024-08-09 | Use correct stemming strategy when searching. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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