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| author | John Nduli | 2024-08-26 12:53:52 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2024-08-26 13:06:47 +0300 |
| commit | a8e3a4fca46df0776b7efa1e82b1f44cc1a8938f (patch) | |
| tree | 1ac39ee9cfde4b518fa3ded9adfa00b5e33409e7 /gn3/api | |
| parent | 7b2a1794c1b7e7c589b1abe6d307b2a7e4cd2c42 (diff) | |
| download | genenetwork3-a8e3a4fca46df0776b7efa1e82b1f44cc1a8938f.tar.gz | |
chore: fix pylint errors
Diffstat (limited to 'gn3/api')
| -rw-r--r-- | gn3/api/metadata_api/wiki.py | 16 |
1 files changed, 9 insertions, 7 deletions
diff --git a/gn3/api/metadata_api/wiki.py b/gn3/api/metadata_api/wiki.py index 7e22c94..dc131d3 100644 --- a/gn3/api/metadata_api/wiki.py +++ b/gn3/api/metadata_api/wiki.py @@ -1,5 +1,7 @@ +"""API for accessing/editting wiki metadata""" + import datetime -from typing import Any, Dict, List +from typing import Any, Dict from flask import Blueprint, request, jsonify, current_app from gn3 import db_utils from gn3.db import wiki @@ -8,12 +10,9 @@ from gn3.db import wiki wiki_blueprint = Blueprint("wiki", __name__, url_prefix="wiki") -class MissingDBDataException(Exception): - pass - - @wiki_blueprint.route("/<int:comment_id>/edit", methods=["POST"]) def edit_wiki(comment_id: int): + """Edit wiki comment. This is achieved by adding another entry with a new VersionId""" # FIXME: attempt to check and fix for types here with relevant errors payload: Dict[str, Any] = request.json pubmed_ids = [str(x) for x in payload.get("pubmed_ids", [])] @@ -44,13 +43,16 @@ def edit_wiki(comment_id: int): category_ids = wiki.get_categories_ids(cursor, payload["categories"]) species_id = wiki.get_species_id(cursor, payload["species"]) next_version = wiki.get_next_comment_version(cursor, comment_id) - except MissingDBDataException as missing_exc: + except wiki.MissingDBDataException as missing_exc: return jsonify(error=f"Error editting wiki entry, {missing_exc}"), 500 insert_dict["SpeciesID"] = species_id insert_dict["versionId"] = next_version current_app.logger.debug(f"Running query: {insert_query}") cursor.execute(insert_query, insert_dict) - category_addition_query = "INSERT INTO GeneRIFXRef (GeneRIFId, versionId, GeneCategoryId) VALUES (%s, %s, %s)" + category_addition_query = """ + INSERT INTO GeneRIFXRef (GeneRIFId, versionId, GeneCategoryId) + VALUES (%s, %s, %s) + """ for cat_id in category_ids: current_app.logger.debug(f"Running query: {category_addition_query}") |