| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-08-26 | Move "GET /wiki/<symbol>" end-point to gn3.api.metadata.wiki. | Munyoki Kilyungi | |
| * gn3/api/metadata.py (get_wiki_entries): Move this... * gn3/api/metadata_api/wiki.py (edit_wiki): ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Auto-pep8 buffer and ignore type check for payload. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py (edit_wiki): Ignore type-check for payload. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Fix pylint errors. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Remove duplicate imports. * gn3/db/constants.py: Add docstring. * gn3/db/rdf.py (get_wiki_entries_by_symbol): Remove duplicate dictionary key. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | If there's no data, return a 404. | Munyoki Kilyungi | |
| * gn3/api/metadata.py (get_wiki_entries): Return an empty {} when there's no data. * gn3/db/rdf.py (query_frame_and_compact): Delete check for empty results. Instead just return the context as is. (query_and_compact): Ditto. (query_and_frame): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Set correct content-header & status code for ld+json/json response. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Import jsonify, make_response. (get_wiki_entries): Set a 404 status code when a response is empty. Set correct Content-Type header for ld+json. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Fetch all the wiki entries by symbol. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Import "get_wiki_entries_by_symbol". (get_gn_genewiki_entries): Rename this to... (get_wiki_entries): this; and update the URL endpoint. * gn3/db/rdf.py: Import constants.BASE_CONTEXT. (get_wiki_entries_by_symbol): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Move constants to their own file. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Move constants from here... * gn3/db/rdf.py: ... and here, to... * gn3/db/constants.py: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | Run autopep8 against file. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-26 | chore: fix pylint errors | John Nduli | |
| 2024-08-26 | refactor: split out utlities into their modules and change api to use metadata | John Nduli | |
| 2024-08-26 | refactor: clean up wiki edit implementation | John Nduli | |
| * Add better error messages * Create more modular functions | |||
| 2024-08-26 | feat: add support for categories in edit query and clearer errors | John Nduli | |
| 2024-08-26 | feat: support for edit wiki entry | John Nduli | |
| 2024-08-09 | Use correct stemming strategy when searching. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-09 | Add RIF/WIKI as search prefixes for XRF/XWK. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-01 | Stem group field regardless of case. | Arun Isaac | |
| * gn3/api/search.py (parse_boolean_prefixed_field): New function. (parse_query): Use parse_boolean_prefixed_field for the group field. | |||
| 2024-08-01 | Stem all the time. | Arun Isaac | |
| With the STEM_SOME, xapian does not stem query words that start with a capital letter. Hence, we switch to the STEM_ALL strategy. * gn3/api/search.py (parse_query): Set stemming strategy to STEM_ALL. | |||
| 2024-07-08 | Pass output directory to R/qtl script instead of pulling it from the | zsloan | |
| environment Also fixes issue where the control marker keyword was wrong | |||
| 2024-07-05 | fix: return query error message from xapian | John Nduli | |
| 2024-07-03 | fix: use correct prefix and index key; group wiki cache query | John Nduli | |
| 2024-07-03 | feat: add wikidata prefix to search api | John Nduli | |
| 2024-06-26 | Increase max number of results to 50000 for Xapian search | zsloan | |
| This change needs to be accompanied by a change in GN2! If it's lower than the GN2 MAX_SEARCH_RESULTS value, searches will throw an error. | |||
| 2024-06-12 | fix: use current_app's logger to log db errors | John Nduli | |
| 2024-06-01 | Add geneRIF prefix. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-05-29 | Add delete functionality for gnqa history. | Alexander_Kabui | |
| 2024-05-27 | Update Docstrings for Api endpoints and functions. | Alexander_Kabui | |
| 2024-05-24 | Add created_at timestamp for Rating table. | Alexander_Kabui | |
| 2024-05-24 | Add created_at timestamp to History table. | Alexander_Kabui | |
| 2024-05-24 | Remove kwargs from LLMErrorr Exceptions and update relevant code. | Alexander_Kabui | |
| 2024-05-24 | Remove Try/Excepts from llm api endponts. | Alexander_Kabui | |
| 2024-05-23 | Remove irrelevant variable assignments. | Alexander_Kabui | |
| 2024-05-23 | rename gnqna route to search. | Alexander_Kabui | |
| 2024-05-23 | Refactor error handling code. | Alexander_Kabui | |
| 2024-05-22 | This commit does the following: | Alexander_Kabui | |
| * Adds a new table to store the history records. * Remove the redis dependancy. | |||
| 2024-05-22 | Refactor error handling for llm api's. | Alexander_Kabui | |
| 2024-05-21 | Remove obsolete functions. | Alexander_Kabui | |
| 2024-05-21 | Add search gnqa history functionality. | Alexander_Kabui | |
| 2024-05-20 | Delete search endpoints for datasets/publications. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Delete "query_and_frame" import. (search_datasets): Delete. (search_publications): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-05-17 | Add endpoint for getting prev user searches | Alexander_Kabui | |
| 2024-05-15 | Rename GnQNA blueprint to gnqa. | Alexander_Kabui | |
| * register gnqa api endpoint | |||
| 2024-05-15 | Remove broad error handling. | Alexander_Kabui | |
| 2024-05-15 | Pep8 formatting for llm Api file. | Alexander_Kabui | |
| 2024-05-09 | Improve error messaging for use of invalid fahamu token. | Alexander_Kabui | |
| 2024-05-01 | pep8 formatting | Alexander_Kabui | |
| 2024-05-01 | Delete debug code | Alexander_Kabui | |
| 2024-05-01 | Debug: check for if config is loaded in gn3. | Alexander_Kabui | |
| 2024-05-01 | Fix: fix string formatting error and remove unused imports. | Alexander_Kabui | |
| 2024-05-01 | Refactoring | Alexander_Kabui | |
| *general cleanup for debug code * improve error messaging for successful rating | |||
| 2024-05-01 | Debug:fix issue use current_app to fetch config | Alexander_Kabui | |
| 2024-05-01 | Debug Process for LLM_DB_PATH | Alexander_Kabui | |
| * this commit is a debugging process for llm_path on cd * issue: writes to db but not correct path | |||
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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