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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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Author
2023-10-27
Use virtuoso's full text search when searching datasets.
Munyoki Kilyungi
2023-10-27
REmove un-necessary prefixes when searching datasets.
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/datasets/:group/list".
Munyoki Kilyungi
2023-10-27
Support using AccessionId to fetch datasets.
Munyoki Kilyungi
2023-10-27
Remove PREFIXES when querying datasets.
Munyoki Kilyungi
2023-10-27
Add extra prefixes to the context.
Munyoki Kilyungi
2023-10-27
Implement "GET /group/:name".
Munyoki Kilyungi
2023-10-27
Implement "GET metadata/groups".
Munyoki Kilyungi
2023-10-27
Implement "GET /species/:name".
Munyoki Kilyungi
2023-10-27
Implement "GET /species".
Munyoki Kilyungi
2023-10-27
Implement "GET /genewikis/ncbi/:symbol".
Munyoki Kilyungi
2023-10-27
Delete gn3.db.rdf.sparql_query.
Munyoki Kilyungi
2023-10-27
Implement "GET /genewikis/gn/:symbol".
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/phenotypes/:name".
Munyoki Kilyungi
2023-10-27
Remove un-used get_dataset_metadata import.
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/genotypes/:name".
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/publications/search/:term".
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/publications/:name".
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/datasets/search/:term".
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/datasets/:name".
Munyoki Kilyungi
2023-10-27
Simplify CONSTRUCT query when fetching a dataset's metadata.
Munyoki Kilyungi
2023-10-06
Provide keyword argument.
Frederick Muriuki Muriithi
2023-10-06
Pass in configs/settings as function arguments
Frederick Muriuki Muriithi
2023-09-05
Fix C3001: Lambda expression assigned to a variable
Munyoki Kilyungi
2023-06-15
Fetch genotypes from virtuoso
Munyoki Kilyungi
2023-06-12
Fetch phenotypes from virtuoso
Munyoki Kilyungi
2023-06-12
Correct publication function docstring
Munyoki Kilyungi
2023-06-07
Add publication end-point
Munyoki Kilyungi
2023-06-07
Remove trait_metadata endpoint
Munyoki Kilyungi
2023-06-06
Rename dataset_metadata -> dataset
Munyoki Kilyungi
2023-04-17
Create new endpoint for fetching GeneRIF entries
Munyoki Kilyungi
2023-04-06
Remove deprecated `gn3.db_utils.database_connector` function
Frederick Muriuki Muriithi
2023-03-01
Fetch sampledata
Munyoki Kilyungi
2023-03-01
Create API endpoint for fetching trait metadata
Munyoki Kilyungi
2023-01-24
search: Use decimals, not floats, when converting to megabases.
Arun Isaac
2023-01-24
search: Support SI suffixes and point locations.
Arun Isaac
2023-01-24
search: Abstract out parsing of position spec into separate function.
Arun Isaac
2023-01-24
search: Alias the position prefix with pos.
Arun Isaac
2023-01-24
search: Rename the mb prefix to position.
Arun Isaac
2023-01-24
search: Assume triplets mean synteny is requested.
Arun Isaac
2023-01-24
search: Use comprehension when splitting location.
Arun Isaac
2023-01-20
mypy: minor fixes to typing errors
Frederick Muriuki Muriithi
2023-01-19
search: Downcase before applying SI suffix.
Arun Isaac
2023-01-19
search: Use decimals, not floats, to manipulate range limits.
Arun Isaac
2023-01-19
search: Only look for SI suffix in the last character.
Arun Isaac
2023-01-19
search: Apply SI suffix only if last character is an actual suffix.
Arun Isaac
2023-01-18
search: Ensure limits of chromosomal interval is non-negative.
Arun Isaac
2023-01-18
search: Convert point locations to a +/- 50 kbase range.
Arun Isaac
2023-01-18
Pass species and species prefix as a single query argument.
Arun Isaac
2023-01-18
auth: Fix tests after enforcing FOREIGN KEY constraint
Frederick Muriuki Muriithi
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