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genenetwork3
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auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2025-07-07
feat: Add decorator to act as a fallback for anonymous users.
Alexander_Kabui
2025-07-07
refactor: Replace cache query with user query if results in db.
Alexander_Kabui
2025-07-07
feat: Add function to clean up query before dumping to db.
Alexander_Kabui
2025-07-07
feat: Expand previous query search window from 1 to 21 days
Alexander_Kabui
2025-06-17
Fix pylint issues in db/sample_data.py
zsloan
2025-06-17
Include n_cases in batch update queries
zsloan
2025-06-17
Add Batch Update code to GN3
zsloan
2025-06-17
Change sample_data fetch functions so they can use different inputs
zsloan
2025-06-17
Add function for retrieving group_id given group_name
zsloan
2025-04-30
Revert commit dd9ef90ee89e5c075acbd5ef63cb89518e726ca3.
Alexander_Kabui
2025-04-30
refactor: For genetic probabilites use cores 0 to use all
Alexander_Kabui
2025-04-30
Disable log-in for wiki edits.
Munyoki Kilyungi
2025-04-25
Handle null species in wiki comment query
Munyoki Kilyungi
2025-04-25
Return a zero when the species is unspecified.
Munyoki Kilyungi
2025-04-25
Skip adding a species to RDF when the species is unspecified.
Munyoki Kilyungi
2025-04-24
Add "**kwargs" to delete_wiki to make @require_token to work.
Munyoki Kilyungi
2025-04-24
Remove early return in delete_wiki to complete query execution.
Munyoki Kilyungi
2025-04-22
Fix pylint errors.
Munyoki Kilyungi
2025-04-22
Implement delete_wiki API endpoint.
Munyoki Kilyungi
2025-04-22
Add function to delete wiki entries by wiki_id.
Munyoki Kilyungi
2025-04-22
Add test case for deleting wiki data.
Munyoki Kilyungi
2025-04-22
Correctly ignore broad-expection-raised exceptions.
Munyoki Kilyungi
2025-04-22
Autopep-8 file.
Munyoki Kilyungi
2025-04-22
sheepdog/worker.py: Fix logging-fstring-interpolation warning.
Munyoki Kilyungi
2025-04-22
Auto-pep8 files.
Munyoki Kilyungi
2025-04-22
Reduce arguments in run_async_cmd by using options dictionary.
Munyoki Kilyungi
2025-04-14
Include effect mean/SE for 4-way crosses in R/qtl results
zsloan
2025-04-09
Initialise the sheepdog package to ensure the worker gets installed.
Frederick Muriuki Muriithi
2025-04-08
Fix failing test.
Frederick Muriuki Muriithi
2025-04-08
Pass application log-level to the worker.
Frederick Muriuki Muriithi
2025-04-08
Use computed job queue to avoid collisions.
Frederick Muriuki Muriithi
2025-04-08
Add a function to compute the job queue from the settings.
Frederick Muriuki Muriithi
2025-04-08
APPLICATION_ENVIRONMENT: New configuration variable
Frederick Muriuki Muriithi
2025-04-08
Add logging to worker.
Frederick Muriuki Muriithi
2025-04-08
sheepdog.worker: Pass in the queue name on the CLI
Frederick Muriuki Muriithi
2025-04-08
BUG: Provide a tuple, of tuple of floats
Frederick Muriuki Muriithi
2025-04-08
Use correct key.
Frederick Muriuki Muriithi
2025-04-08
Indent code properly.
Frederick Muriuki Muriithi
2025-04-08
refactor: Explicity define no of cores for rqtl2 computation.
Alexander_Kabui
2025-04-08
feat: Append GN3 computation completion marker to log file.
Alexander_Kabui
2025-04-08
fix: Pylint fix for unused variable.
Alexander_Kabui
2025-04-08
refactor: Check for geno_tranposed and founder_geno_transposed.
Alexander_Kabui
2025-04-07
Remove debug logging: current_app.logger requires app context.
Frederick Muriuki Muriithi
2025-04-07
Log out debug messages separate from active statements.
Frederick Muriuki Muriithi
2025-04-07
Split the command if its a single, non-json-parseable string.
Frederick Muriuki Muriithi
2025-03-27
refactor: Temporary disable checking sex covariates in rqtl2.
Alexander_Kabui
2025-03-27
feat: Check for founder and covar file in rqtl2 metadata.
Alexander_Kabui
2025-03-21
Use HTTPS for LLM endpoint.
Munyoki Kilyungi
2025-03-18
Order species by species id.
Munyoki Kilyungi
2025-03-07
Merge pull request #218 from genenetwork/chores/refactor-qtl2-script
Alexander Kabui
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