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2025-02-07fix: pass the correct genome probabilites.Alexander_Kabui
2025-02-07feat: Add the qtl to method to be used.Alexander_Kabui
2025-02-07feat: Enable streaming functionality for rqtl2.Alexander_Kabui
2025-02-07fix: fix for fetching significance results.Alexander_Kabui
2025-02-06refactor: code refactoring.Alexander_Kabui
2025-02-06feat: Add the physical map file path.Alexander_Kabui
2025-02-06feat: Include the physical map position in results.Alexander_Kabui
2025-02-06refactor: Rename pheno_map to physical_map .Alexander_Kabui
2025-02-06mypy fixes.Alexander_Kabui
2025-02-06feat: Add functionality to process output to compute endpoint.Alexander_Kabui
2025-02-06refactor process qtl2 results function to include output reading.Alexander_Kabui
2025-02-06feat: Add function to process qtl2 output results.Alexander_Kabui
2025-02-06feat: Add function to process qtl scan results.Alexander_Kabui
2025-02-06feat: Pass scan results file and genotype map file as output.Alexander_Kabui
2025-02-06feat: Modify default thresholds and write permutation results to csv file.Alexander_Kabui
2025-02-06feat: Add function to process permutation results.Alexander_Kabui
2025-02-06feat: Add function to fetch significance results.Alexander_Kabui
2025-02-06Refactor: return the relative file to the workspace directory.Alexander_Kabui
2025-02-06Minor fix.Alexander_Kabui
2025-02-06Refactor workspace directory creation to use pathlib's mkdir method.Alexander_Kabui
2025-02-06refactor: Minor cleanup.Alexander_Kabui
2025-02-06refactor: Refactor run_process function.Alexander_Kabui
2025-02-06Add test assertions for writing data to csv.Alexander_Kabui
2025-02-06refactor: Add file_path to output only if it is created.Alexander_Kabui
2025-02-06refactor: Check if data before attempting write operation.Alexander_Kabui
2025-02-06feat: Add unittests for rqtl2 computations.Alexander_Kabui
2025-02-06refactor: return code for Calledprocesserror response.Alexander_Kabui
2025-02-06refactor: Refactor compute endpoint for rqtl2.Alexander_Kabui
2025-02-06feat: Add module docstring for rqtl2 computations.Alexander_Kabui
2025-02-06refactor: remove unused imports.Alexander_Kabui
2025-02-06feat: Add function to write input data to a json file.Alexander_Kabui
2025-02-06feat: Add function to prepare files and workspace directory for computation.Alexander_Kabui
2025-02-06feat: Add utility function to create a file if it does not exist.Alexander_Kabui
2025-02-06feat: Add function to compose an rqtl2 run command.Alexander_Kabui
2025-02-06feat: Add function to validate list of keys in object.Alexander_Kabui
2025-02-06feat: Add function to generate rqtl2 data files.Alexander_Kabui
2025-02-06feat: Add method to write list of data to csv file.Alexander_Kabui
2025-02-06feat: Add computational module for rqtl2.Alexander_Kabui
2025-01-28Pass in virtuoso ttl directory as a CLI optionFrederick Muriuki Muriithi
Pass in the directory as a command-line option to add flexibility to the deployment. Prior to this commit, the script made the assumption that the TTL directory would show up on the path "/var/lib/data", which is not always the case.
2025-01-27Revert "Set guix channel to b0b988c41c9e0e591274495a1b2d6f27fcdae15a."Munyoki Kilyungi
This reverts commit 23faa193d7b52fb0abf6f00dc405e7f10ba86b20.
2025-01-27Type ignore gn_libs imports.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-01-27Ignore missing mypy library stubs for mypy.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-01-27Ignore pylint error for un-used import.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-01-27Delete unused imports.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-01-27Delete un-used database_connection test.Munyoki Kilyungi
* tests/unit/test_db_utils.py (test_database_connection): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-01-27Set guix channel to b0b988c41c9e0e591274495a1b2d6f27fcdae15a.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-01-26Skip test that checks working of MySQLdb rather than GN3.Frederick Muriuki Muriithi
2025-01-26Use gn-libs' `database_connection` function.Frederick Muriuki Muriithi
2025-01-21Enable new inserts of new wiki entries.Munyoki Kilyungi
* gn3/api/metadata_api/wiki.py: Import Optional (edit_wiki): Add "/edit" route. Add new comment id. * gn3/db/wiki.py (get_next_comment_id): New function for fetching the getting the next comment_id. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-01-13mypy fixes.Alexander_Kabui
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-11-23 04:32:35 +0000