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| author | Alexander_Kabui | 2025-02-07 14:17:17 +0300 |
|---|---|---|
| committer | Alexander_Kabui | 2025-02-07 14:17:17 +0300 |
| commit | febd6ebebfba2b585d98c3e5e35c6713c9781036 (patch) | |
| tree | ea14a276c555f034967ab81328783d9508d4311c | |
| parent | 8a6c3966e63dd2e381892cd0f73deee88ccd2060 (diff) | |
| download | genenetwork3-febd6ebebfba2b585d98c3e5e35c6713c9781036.tar.gz | |
fix: pass the correct genome probabilites.
| -rw-r--r-- | scripts/rqtl2_wrapper.R | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/scripts/rqtl2_wrapper.R b/scripts/rqtl2_wrapper.R index 5ad812e..7cad7d5 100644 --- a/scripts/rqtl2_wrapper.R +++ b/scripts/rqtl2_wrapper.R @@ -226,9 +226,9 @@ print(Xcovar) # Function to calculate the kinship get_kinship <- function(probability, method="LMM"){ if (opt$method == "LMM"){ - kinship = calc_kinship(genome_prob) + kinship = calc_kinship(probability) } else if (opt$method == "LOCO"){ - kinship = calc_kinship(genome_prob, "loco") + kinship = calc_kinship(probability, "loco") }else { kinship = NULL } |