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AgeCommit message (Expand)Author
2024-11-12Remove unused import.Frederick Muriuki Muriithi
2024-11-12mypy: Rename and annotate variables to silence mypyFrederick Muriuki Muriithi
2024-11-12Pure aesthetics: No functional change.Frederick Muriuki Muriithi
2024-11-11Allow extra database connection options on URIFrederick Muriuki Muriithi
2024-10-28fix: remove dangerous default configs and have a detailed error with how to c...John Nduli
2024-10-18refactor: replace gn3.auth.db with gn3.sqlite_db_utils and drop all refs to g...John Nduli
2024-10-18refactor: move definition of auth errs and remove auth cli utilsJohn Nduli
2024-10-18refactor: remove unused gn3.auth modulesJohn Nduli
2024-10-15Lint: Fix linting errors.Frederick Muriuki Muriithi
2024-10-15Pass in correct file path.Frederick Muriuki Muriithi
2024-10-15fix: use require_token to validate gn3 apisJohn Nduli
2024-10-14Run python black against file.Munyoki Kilyungi
2024-10-14Replace CONSTRUCT with SELECT for fetching RIF NCBI entries.Munyoki Kilyungi
2024-10-14Replace species' shortName with it's full name in NCBI test data.Munyoki Kilyungi
2024-10-14Remove "@id" from NCBI test data.Munyoki Kilyungi
2024-10-14Update the NCBI expected test data context.Munyoki Kilyungi
2024-10-14Add end-point for fetching NCBI metadata.Munyoki Kilyungi
2024-10-14Add function for fetching NCBI data.Munyoki Kilyungi
2024-10-14Add NCBI test turtle data.Munyoki Kilyungi
2024-10-02Add rdf-tests after the check phase.Munyoki Kilyungi
2024-10-02Use pathlib to fetch the directory path for tests.Munyoki Kilyungi
2024-10-02Fix pylint failure.Munyoki Kilyungi
2024-10-02feat: cleaner handling of virtuoso processJohn Nduli
2024-10-02Fix typo in comments.Munyoki Kilyungi
2024-10-02Move sparql-auth URIs to gn3-conf in documentation.Munyoki Kilyungi
2024-10-02Add all rdf-tests to GN3 CI.Munyoki Kilyungi
2024-10-02Spin up a local virtuoso instance to run RDF tests against.Munyoki Kilyungi
2024-10-02Add virtuoso ini file to be used during testing.Munyoki Kilyungi
2024-10-02Set a default password for sparql.Munyoki Kilyungi
2024-09-30chore: pylint code fixJohn Nduli
2024-09-30feat: rollback mysql transaction when rdf insert failsJohn Nduli
2024-09-30fix: rdf and sql queries for fetching rif dataJohn Nduli
2024-09-28Update documentation on how to run tests.Frederick Muriuki Muriithi
2024-09-28Lint: fix some linting errors.Frederick Muriuki Muriithi
2024-09-27Debug command.Frederick Muriuki Muriithi
2024-09-27Skip failing test.Frederick Muriuki Muriithi
2024-09-27Bug: Use absolute paths in place of relative paths.Frederick Muriuki Muriithi
2024-09-27Fix Pair-Scan output pathsFrederick Muriuki Muriithi
2024-09-27Set `include_package_data=True` to install R files too.Frederick Muriuki Muriithi
2024-09-27Add a MANIFEST.in to include R scripts.Frederick Muriuki Muriithi
2024-09-27Bug: Use absolute path in place of relative pathFrederick Muriuki Muriithi
2024-09-27Use existing fixture to retrieve settings.Frederick Muriuki Muriithi
2024-09-27Fix R/qtl output pathszsloan
2024-09-23Revert "Add pytest.mark.unit_test for all rdf test-cases."Munyoki Kilyungi
2024-09-23Add pytest.mark.unit_test for all rdf test-cases.Munyoki Kilyungi
2024-09-23Handle missing GN3_SECRETS for CI testing.Munyoki Kilyungi
2024-09-23Fix or ignore pylint errors.Munyoki Kilyungi
2024-09-23Revert "Remove one-line if/else statement."Munyoki Kilyungi
2024-09-23Add section on setting up virtuoso locally.Munyoki Kilyungi
2024-09-23Update docs to use default virtuoso ports.Munyoki Kilyungi
generated by cgit-pink 1.4.1 (git 2.36.1) at 2026-06-15 18:00:15 +0000