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authorFrederick Muriuki Muriithi2024-09-27 16:42:44 -0500
committerFrederick Muriuki Muriithi2024-09-27 16:42:44 -0500
commitb57d43ff863fd1e9a80d1579bc66ce8a7174480e (patch)
tree801f7f5e1b4e980910d234a961410aed29ef015b
parentdbc548bc4bbab7dbb5c7a61f6b46a746153e2bca (diff)
downloadgenenetwork3-b57d43ff863fd1e9a80d1579bc66ce8a7174480e.tar.gz
Debug command.
-rw-r--r--gn3/commands.py3
1 files changed, 2 insertions, 1 deletions
diff --git a/gn3/commands.py b/gn3/commands.py
index d5215f8..9617663 100644
--- a/gn3/commands.py
+++ b/gn3/commands.py
@@ -21,6 +21,7 @@ from redis.client import Redis # Used only in type hinting
from pymonad.either import Either, Left, Right
+from gn3.debug import __pk__
from gn3.chancy import random_string
from gn3.exceptions import RedisConnectionError
@@ -153,7 +154,7 @@ def run_sample_corr_cmd(method, this_trait_data, target_dataset_data):
def run_cmd(cmd: str, success_codes: Tuple = (0,), env: Optional[str] = None) -> Dict:
"""Run CMD and return the CMD's status code and output as a dict"""
- parsed_cmd = json.loads(cmd)
+ parsed_cmd = json.loads(__pk__("Attempting to parse command", cmd))
parsed_env = (json.loads(env) if env is not None else None)
results = subprocess.run(